KEGG   Azorhizobium caulinodans: AZC_4475
Entry
AZC_4475          CDS       T00609                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
azc  Azorhizobium caulinodans
Pathway
azc03420  Nucleotide excision repair
azc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:azc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AZC_4475
   03430 Mismatch repair
    AZC_4475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:azc03400]
    AZC_4475
Enzymes [BR:azc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AZC_4475
DNA repair and recombination proteins [BR:azc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AZC_4475
   MMR (mismatch excision repair)
    Other MMR factors
     AZC_4475
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 AAA_11 PcrA_UvrD_tudor DEAD LacI Tudor_1_RapA
Other DBs
NCBI-ProteinID: BAF90473
RhizoBase: AZC_4475
UniProt: A8HYL6
Position
5090588..5093095
AA seq 835 aa
MPFCSHTRIVCARTRRRLSISPEKRGGPEPRDLAPREDVGRPALKPGGIAERARAAMGIP
AAPTRPSYLDGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRAYPSQIL
AVTFTNKAAREMKERIHAMVGDTVEGMPWLGTFHSIGVRILRRHHELVGLKSGFTILDTD
DQLRLLKQLIAAEEIDEKRWPARMLASAIDGWKNRGLTPEQVPAGEGAAFANGRGQMLYA
AYQARLKALNAVDFGDLLLEGIRLFRENPDVLAEYHRKFKYILVDEYQDTNVAQYLWLRL
LAQGSRNVCCVGDDDQSIYGWRGAEVDNILRFESDFPGAKVIRLERNYRSTGHILAAASH
LIAFNEGRLGKTLFSEGEKGEKVTVTGAWDSGEEARAIGDEIEALQRAGHALSQIAILVR
ASFQMREFEDRFVTLGLNYRVIGGPRFYERAEIRDALAYLRCVISPADDLAFERIVNVPK
RGVGDAAIKQIRDVARAAGVPLMEATRLLTESEELKPKLRSTLRGFVQSFERWREQAENM
KHTELAEVVLDESGYTEMWQKDRSAEAAGRLENLKELVRSMEGFENLSGFLEHISLVMDV
DSGAGDDAVQIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEQGKAGLEEERRLAYVGI
TRARASARVYFASNRRIHGMWNSTVPSRFLDELPDTHVDVQESKGGFGWGGTTGGYGGGN
SYGASRFDNPAPFASSYATPGWQRAQNARNESGGTKGGFGGSGGGYGGSRRGGPVIEGTL
IAASTGAPSAFSAGERVFHIKFGYGEITAIDGNKLTVLFEKAGEKRVLESFVEKV
NT seq 2508 nt   +upstreamnt  +downstreamnt
gtgccattttgttctcacacgagaatcgtgtgtgcgagaacgagacggcgattgtccatt
tcccctgagaagcgcggcggccccgagccccgcgatctggcgccccgcgaagatgtcggc
cgtccggccctgaagcccggcggcatcgccgaacgcgcgcgcgccgccatgggcattccc
gccgcgcccacccgcccttcctatctcgacggcctcaatcccgagcagcgcgaggcggtg
gagacgctggacggccccgtgctcgttcttgccggcgccggcaccggcaagacccgcgtg
ctcaccacccgcatcgcccacattctctcgcagggccgcgcctatccctcgcagatcctc
gccgtgaccttcaccaacaaggccgcgcgggagatgaaggaacgcatccacgccatggtg
ggcgacacggtggaggggatgccgtggctcggcaccttccactccatcggcgtgcgcatc
ctgcgccggcaccatgagctggtgggcctcaagagcggcttcaccattctcgacacggac
gaccagctccgcctgctgaagcagctcatcgcggcggaggagatcgacgagaagcgctgg
cccgcccgcatgctggcctccgccatcgacggctggaagaaccgcggcctcacgcccgag
caggtgcccgccggcgaaggtgctgctttcgccaacgggcgcgggcagatgctctatgcc
gcctatcaggcgcggctgaaggcgctcaacgccgtcgacttcggcgacctcttgctggaa
ggcatccgcctgttccgcgagaaccccgacgtgctcgcggaataccaccgcaagttcaaa
tacattctggtggacgagtatcaggacaccaacgtcgcccagtatctctggctgcggctt
ctagcgcagggttcgcgcaatgtctgctgcgtgggcgacgacgaccagtccatctatggc
tggcgcggcgccgaggtggacaacatcctgcgcttcgagagcgactttcccggcgccaag
gtgatccggctggagcgcaactaccgctccacgggccatatcctggccgccgcttcccat
ctcatcgccttcaacgagggacggctcggcaagacgctgttctccgaaggggagaagggc
gagaaggtcaccgtcaccggcgcgtgggatagcggcgaagaggcccgcgccatcggcgac
gagatcgaggcactccagcgcgcgggccatgcgttgtcgcagatcgccatcctcgtgcgc
gcctccttccagatgcgcgagttcgaggaccgcttcgtcacgctcggcctcaactaccgc
gtcatcggcggtccgcgcttctatgagcgggcggaaatccgcgatgctctggcctatctg
cgctgcgttatttcgccggctgacgatctcgccttcgagcgtatcgtgaacgtgccgaag
cgcggcgtgggcgacgcggccatcaagcaaatccgcgatgtcgcccgcgccgccggcgtg
ccgctgatggaggcgacccgcctcctcaccgagagcgaggagctgaagccgaagctccgc
tcgacgctgcgcggcttcgtccagtcgttcgagcgctggcgcgagcaggccgagaacatg
aagcacaccgagctcgccgaggtggtgctggatgagagcggctacaccgagatgtggcag
aaggaccgctcggcggaggcggccgggcggctggagaacctcaaggaattggtgcgttcc
atggaggggttcgagaacctctcgggcttcctcgagcacatctcgctcgtgatggatgtg
gacagcggcgctggcgacgacgccgtgcagatcatgaccctccactccgccaagggactg
gagttcgacaccgtcttcctgcccggctgggaagagggcctgttcccgcatcagcgggcg
ctggacgagcagggtaaggcgggcctcgaggaagaacgccgtctcgcctacgtgggcatc
acgcgggcgcgggcgagcgcgcgggtctatttcgcctccaaccggcgcatccacggcatg
tggaactctaccgtgcccagccgcttcctcgacgaactgccggacacccatgtggacgtg
caggagagtaagggcggcttcggctggggtggcaccacgggcggctatggcggcggcaac
agctatggcgccagccgcttcgacaatcccgcccccttcgcctccagctatgcgacgccc
ggctggcagcgcgcccagaacgcccggaacgagagcggcggcaccaagggcggcttcggc
ggctccggtggcggctatggcggatcacggcgcggcgggccggtgatcgagggcacgctg
atcgccgcctccaccggcgcgccgtcagccttctcggccggcgagcgggtgttccacatc
aagttcggctatggcgagatcaccgccatcgacggcaacaagctgaccgtgctgttcgag
aaggccggcgagaagcgggtgctggaaagcttcgtcgagaaggtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system