KEGG   Borrelia afzelii (FLI): BAPKO_0472
Entry
BAPKO_0472        CDS       T00383                                 
Symbol
ntrA
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
baf  Borrelia afzelii (FLI)
Pathway
baf02020  Two-component system
baf02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:baf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BAPKO_0472 (ntrA)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BAPKO_0472 (ntrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:baf03021]
    BAPKO_0472 (ntrA)
Transcription machinery [BR:baf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BAPKO_0472 (ntrA)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID MarR HTH_36 HTH_11 HTH_26 LacI HTH_3 HTH_24
Other DBs
NCBI-ProteinID: ABH01719
Position
complement(473862..475121)
AA seq 419 aa
MIKQKLKLSQNLNSIQIQTIKLLSLNKKELTQLILEEIENNECLKIDSNKIFFETLKTYR
FKKVFYKEDNMIKNQHDIALEKTQTNISLKEHLLLQLRIQRINEDELKIGEILINNLNNK
GFHIINPYDLFKKEEKEKVKKIIELIQKFDPIGICVPNIIESLILQAKHHKLESNIIKIL
EKAELLEKTQEKLKEELKIRSKEFNTALEIIRQKLNPNPTFEFKDPEDTNFYVDPDILII
NHNNKFKIKIKEVNIFKKELKRTNENPQKQKKAKWLIESLRYRDEILAKIGIAIYTLQKE
FLRRGFKSLRPMNLSILSEKINVSKSTISRAIKNKYLKCEWGTILIKELFSSVGGAKTNE
FSKLSIKITVKKLLEVNKKMSDKAISAILKSKGISISRRTVNKYRNELKSEKGRIYYGT
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgattaaacaaaaattaaaattatctcaaaatttaaactcaattcaaatacaaacaata
aaattattaagtcttaataaaaaagaattaacacagcttatattagaagaaatcgaaaat
aacgaatgcctaaaaatagactcaaataaaatattttttgaaacattaaaaacatataga
tttaaaaaggttttttataaagaagataatatgataaaaaatcaacacgacatagcgctt
gaaaaaacacaaacaaacatttctttaaaagaacaccttttgctacaattaagaattcaa
agaataaacgaagatgaacttaaaataggtgaaatattaataaacaatctaaacaacaaa
ggctttcatataataaacccttacgatctttttaaaaaggaagaaaaagaaaaagtaaaa
aaaataattgaacttattcaaaaatttgatccaataggaatttgtgtccccaatataata
gaatcgttaattttacaagcaaagcatcataaattagaaagtaatattattaaaattctt
gaaaaagcagaacttcttgaaaaaactcaagaaaagttaaaagaagagctcaaaataaga
agtaaagaatttaacacagctttagaaattataagacaaaagctcaatcccaacccaaca
ttcgaatttaaagacccagaagacactaatttttatgttgatccagatatattaataata
aaccacaataacaaatttaagattaaaatcaaagaagttaacatctttaaaaaagaactt
aaaagaacaaatgaaaatcctcaaaaacaaaaaaaagcaaaatggttaatcgaatcattg
agatatagagacgaaatacttgcaaaaataggaatagctatatacacattgcaaaaagaa
tttttaagaagaggttttaaaagcttaagaccaatgaacttgagcattttgtcagaaaaa
atcaatgtatcaaaatcaacaatatcaagagcaataaaaaataaatatttaaaatgcgaa
tggggtaccatattaatcaaagagctctttagctctgttggtggagcaaaaacaaatgaa
ttttcaaaattaagcattaaaataacagtaaaaaagttgctagaagtaaataaaaagatg
tcagataaagcaatttctgctatactaaaatccaaaggaatctctatttctagaagaaca
gtaaacaagtatagaaatgaattaaaatctgagaaaggaagaatatattatggaacctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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