KEGG   Beijerinckiaceae bacterium RH AL1: RHAL1_04020
Entry
RHAL1_04020       CDS       T06029                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
bbar  Beijerinckiaceae bacterium RH AL1
Pathway
bbar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHAL1_04020 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbar03019]
    RHAL1_04020 (pnp)
   03016 Transfer RNA biogenesis [BR:bbar03016]
    RHAL1_04020 (pnp)
Enzymes [BR:bbar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RHAL1_04020 (pnp)
Messenger RNA biogenesis [BR:bbar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RHAL1_04020 (pnp)
Transfer RNA biogenesis [BR:bbar03016]
 Prokaryotic type
  tRNA degradation factors
   RHAL1_04020 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 aRib
Other DBs
NCBI-ProteinID: VVC57083
UniProt: A0A5E4P3Z1
Position
1:4051570..4053720
AA seq 716 aa
MFEVHREVIDWAGRPLVLETGKIARQADGAVLASYGETTVLATVVGLKAPKPGQDFFPLT
VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLAH
DLENDPDILAMVATSAALTLSGIPFMGPIGAARVGHIGGQLKLNPTIDEVKESALDLVVA
GTQDAVLMVESEAKELSEEAMLEAVMLGHKGFQPVIDAIIRLAEKAAKEPRDLVVADHSE
VEKAVAAVAEAELREAYKITVKQDRYKAVDAVKAKVTAALFPEGAEPKFSKEEVGKVFHD
LQAKVVRWNILDTGIRIDGRDVKTVRPIVAEAGFLPRAHGSALFTRGETQAMVVATLGTG
EDEQFIDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAA
EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGEKFAVLS
DILGDEDHLGDMDFKVAGTEAGVTSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAK
ALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS
SDGAKIKAAINWIKSIASDPEVGQIYEGTVVKCVDFGAFVNFFGSKDGLVHISQLAKGRV
NKTQDVVSEGQKVKVKLMGFDDRGKVRLSMRVVDQETGEDLEAKEAAAGKGEAAAE
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgttcgaagttcatcgcgaagtgatcgactgggccgggcgcccgctcgtgctcgagacg
ggcaagatcgcccgccaggccgacggcgccgtgctcgcctcctacggcgagaccaccgtg
ctcgccaccgtcgtcgggctgaaggcgccgaagccggggcaggatttcttcccgctcacc
gtcaactaccaggaaaaggccttcgcggcgggccgcatccccggcggctacttcaagcgc
gaggggcggccgagcgagaaggagacgctggtctcccgcctcatcgatcgcccgatccgc
ccgctgttcccggagggctaccgcaacgacacgcaggtcgtcgtcaccgtgctggcgcac
gacctcgagaacgatcccgacatcctcgccatggtcgccacctcggcggcgctcaccctc
tccggcatcccgttcatgggcccgatcggcgccgcccgcgtcggccacatcggcggccag
ctcaagctgaacccgaccatcgacgaggtgaaggagtcggcgctcgacctcgtcgtcgcc
ggcacgcaggacgcggtgcttatggtcgagtccgaggccaaggagctgtcggaagaggcg
atgctcgaggccgtcatgctcggccacaagggcttccagcccgtcatcgacgcgatcatc
cgcctcgccgagaaggccgccaaggagccgcgcgacctcgtcgtcgccgatcactccgag
gtcgagaaggcggtcgccgccgtcgccgaggcggagctgcgcgaggcctacaagatcacc
gtgaagcaggaccgctacaaggcggtggacgcggtgaaggccaaggtcaccgccgcgctg
ttccccgaaggggccgagccgaagttctcgaaggaggaggtcggcaaagtcttccacgac
ctgcaggccaaggtggtgcgctggaacatcctcgacaccggcatccgcatcgacggccgc
gacgtgaagacggtccgcccgatcgtcgccgaggccggcttcctgccgcgcgcgcacggc
tcggcgctgttcacccgcggcgagacgcaggcgatggtcgtcgccacgctcggcaccggc
gaggacgagcagttcatcgactcgctcgagggcacctacaaggagcgcttcctcctccac
tacaactttccgccctactcggtcggcgagaccggccgcatgggctcgcccggccgccgc
gagatcggccacggcaagctcgcctggcgcgccatccgcccgatgctgccgacggcggcc
gagttcccctacacgatccgcgtcgtctccgagatcaccgagtcgaacggctcgtcctcg
atggcgacggtctgcggctcctcgctggcgctgatggacgccggcgtgccgctgaagcgc
ccgaccgccggcatcgccatgggcctcatcctcgagggtgagaagttcgcggtgctctcc
gacatcctcggcgacgaggaccacctcggcgacatggacttcaaggtcgccggcaccgag
gccggcgtcacctcgctgcagatggacatcaagatcgccggcatcaccgaggagatcatg
aaggtcgccctcgcgcaggcgaaggacggccgcatccacatcctcggcgagatggcgaag
gcgctcaccggcgcccgcgccgagctcggcgagttcgccccgcgcatcgagacgctgaag
atcccgaccgacaagatccgcgaggtgatcggcaccggcggcaaggtgatccgcgagatc
gtcgagaagaccggcgccaaggtgaacatcgaggacgacggcacggtgaaggtcgcctcc
tccgacggcgccaagatcaaggcggcgatcaactggatcaagtcgatcgcctccgacccc
gaggtcggccagatctacgagggcacggtcgtcaagtgcgtcgacttcggcgccttcgtg
aacttcttcggctccaaggacggcctcgtccacatctcgcagctcgccaagggccgcgtg
aacaagacccaggacgtcgtctcggaaggccagaaggtgaaggtcaagctgatgggcttc
gacgaccgcggcaaggtgcggctctcgatgcgcgtggtggaccaggagacgggcgaggac
ctcgaggcgaaggaagccgcagccggcaagggcgaggcggcggcggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system