KEGG   Bifidobacterium breve NCFB 2258: B2258_0954
Entry
B2258_0954        CDS       T03122                                 
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
bbrn  Bifidobacterium breve NCFB 2258
Pathway
bbrn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bbrn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    B2258_0954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbrn03400]
    B2258_0954
DNA repair and recombination proteins [BR:bbrn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B2258_0954
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      B2258_0954
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N nSTAND1 AAA_16 AAA_29 AAA_21 RsgA_GTPase AAA_23 APS_kinase DnaJ_CXXCXGXG NACHT IIGP Viral_helicase1 cobW RACo_linker Cytochrome_C7 Frankia_peptide Cytochrom_c3_2
Other DBs
NCBI-ProteinID: AHJ21155
Position
1150619..1153648
AA seq 1009 aa
MAAAQTGTKRATGGAGAKTDKGKNGKVIVEKVMTSDSFLSREIKKAPLVEHDGSLVADIS
HIPNDLKITIQGAREHNLKNVDLAIPRNRMVVFTGLSGSGKSSLAFDTLFAEGQRRYVES
LSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKTTNRNPRSTVGTITEIYDYLRLLFARTG
IPHCPECGEPVASQTPQQIVDTLLDYPERTRFQILAPVVKGRKGEFVDMLELLRSDGYAR
ALIDGEMKQLSDDIKLTKQKKHTIEVVVDRLVVKDGIRQRLTDSVETALKLANGSIVIDF
VDEEEGSPARRRPFSEHRSCPNGHVLELDEVEPRTFSFNAPYGACPACTGLGFKLEIDPE
LVISDPDKSLADGVIEPWSGTKMTSQYYGHILEGLAKEMGFSMKTPWKDLPADVKHDILY
GHDFKVNVSYRNRWGRLREYSTGFEGVVRTLMRRHDETDSQSMREYYESYMREVPCQVCQ
GRRLKPEVLAVTVDGKSIFDVCDMPVVHELAWVNGLKLEGSAQMIAGEVLKEIKARLGFL
NDVGLDYLTLSRAAATLSGGEAQRIRLATQIGSGLVGVMYVLDEPSIGLHQRDNERLIET
LHHLRDLGNTLIVVEHDEDTIRQADWLVDIGPGAGEHGGEVIYSGPAKHLIEAKRSITGD
YIAHRREIAVPAKRRKVRKTQMLKVVGARENNLKNIDVSFPLGVLTVVTGVSGSGKSSLV
NSILYPVLADKLNGARIVPGKHTRVEGVDQVRKVIHVDQNPIGRTPRSNPATYTGVWDKI
RALFAKTPEAQVRGYGPGRFSFNVKGGRCEACHGDGTLKIEMNFLPDVYVECETCHGKRY
NRETLEVTYNGKTVSDILDMPIEEAANFFKAYTGISRYLKTLVDVGLGYIRLGQPAPTLS
GGESQRVKLATELQRRSDGKTVYILDEPTTGLHFEDVNKLLKVLQSLVDKGNTVIVIEHN
LDVIKEADWLIDLGPEGGDGGGTIVTQGTPEQVAECDESWTGKFLKPML
NT seq 3030 nt   +upstreamnt  +downstreamnt
gtggcggcagcgcaaactggcacaaagcgcgcaactggcggagcgggcgcgaaaaccgac
aagggcaagaacggcaaagtcatcgtggaaaaggtgatgaccagcgactcattcctgagc
cgcgaaatcaaaaaagcgccgctcgtcgagcatgacggttcgctggtagcggacatctca
cacatcccaaacgacctcaagatcaccattcagggcgcacgagagcacaacctgaagaac
gtggatcttgcgattccgcgtaaccgcatggtcgtgttcaccggcctgtccggttccggc
aaatcatcgctcgcgttcgacaccttgttcgccgaaggccagcgccggtacgtcgaatcc
ctgtccgcctacgcccgccagttcctaggccagatggacaagcccgacgtcgacttcatc
gaaggcctgagcccagccgtctccatcgatcagaagaccaccaaccgcaacccgcgttcg
accgtcggcaccatcaccgaaatctacgattacctacgactgctattcgcccgcaccggt
attccgcactgccctgaatgcggcgagccggtcgcatcccagaccccgcagcaaatcgtc
gacaccctgctcgattacccggaacgcacgcgattccagattcttgctcccgtggtcaag
ggccgcaagggcgagttcgtggatatgcttgaactgctgcgctccgacggttatgcccgc
gcgctcatcgacggcgaaatgaagcagctgtccgacgacatcaaactcaccaagcagaag
aagcacaccatcgaagtggtggtcgaccgacttgtggtcaaggacggcatccgacagcgc
ctgaccgactcggtggaaaccgcgctgaagctcgccaacggcagcatcgtcatcgacttc
gtggacgaggaggaaggcagccccgcgcgccgccgcccgttctccgaacaccgcagctgt
ccgaatggtcatgtgctcgaactcgatgaggtcgaaccgcgcacgttctccttcaacgcc
ccctacggcgcctgcccggcctgcaccggtctcggcttcaaactcgaaatcgacccggag
ctcgtgatctccgacccggataaatccctggccgacggtgtcattgagccgtggagcggc
accaagatgacctcccagtactacggccacatccttgaaggtctggccaaggaaatgggt
ttctccatgaagaccccgtggaaggatctgccggccgacgtcaagcacgacatcctctac
ggccatgacttcaaagtcaacgtctcctaccgcaaccgttggggtcgcctgcgcgaatac
tccaccggctttgagggcgtggtgcgcacgctgatgcgccgccacgacgaaaccgactcg
cagtccatgcgtgaatactacgagtcctacatgcgcgaggtaccttgccaggtctgccaa
ggccgccgcctgaagcccgaagtgctcgcggtcaccgtggatggcaaatccatcttcgac
gtgtgcgatatgcccgtagtgcacgaactcgcctgggtcaacgggctcaagctcgaaggc
tcggcacagatgattgctggcgaagtcctgaaagagatcaaggcgcgcctcggcttcctc
aatgacgtcggactcgactatctgaccctttcacgcgcggcagccaccctgtccggcggt
gaagcgcagcgcatccgactcgccacgcagattggctccggtctggtcggcgtcatgtac
gtgctcgacgagccttccatcggcctgcaccagcgcgacaacgaacgactcatcgagacc
ctgcatcatctgcgagaccttggcaatacgctgattgtggtcgagcacgatgaggacacc
attcgtcaggccgactggctggtcgacatcggccccggagccggcgagcatggcggcgaa
gtcatctactccggtccagccaagcacctcatcgaggcgaagcgttccatcaccggcgac
tacatcgcccaccgtcgcgaaatcgccgtgcccgccaagcgccgcaaggtgcgcaagacc
cagatgctcaaggtcgtaggcgcacgtgagaacaacctcaagaacatcgacgtgagcttc
ccgctcggcgtgctcaccgtggtcaccggtgtctccggctccggcaaatcctcgcttgtc
aactcgatcctctacccggtgctcgccgacaagctcaacggcgcacgcatcgtgcccggc
aagcatacgcgcgtcgaaggcgtcgaccaggtgcgcaaagtgatccacgtcgatcagaac
ccgatcggccgcactccacgctccaacccagccacctataccggcgtgtgggacaagatt
cgtgcactcttcgccaaaacccccgaagcacaggtgcgcggctacggccccggccgattc
agcttcaacgtcaagggaggccgctgtgaagcctgccacggcgacggcacgctgaagatc
gaaatgaacttcctgccggacgtctacgtggaatgcgagacctgccacggcaaacgatac
aaccgtgaaaccctcgaagtcacgtacaacggcaaaaccgtttccgatattctcgatatg
cccatcgaagaggcagccaacttcttcaaggcctacaccggcatttcccgatatctgaag
accttggtggacgtcggcctcggatacatccggctcggccagcccgcgcccaccctgtcc
ggcggtgaatcgcagcgcgtcaaactcgccaccgaactgcaacgccgttccgacggcaag
accgtgtacatcctcgacgagccgaccaccggtctgcacttcgaagatgtaaacaagctg
ctcaaagtgctgcaatccctagtggacaagggcaatacggttattgtcatcgaacataat
ctggacgtgatcaaggaggccgattggttgattgatcttggtccggaaggcggtgacggc
ggcggcaccatcgttacgcagggcactcctgagcaggttgccgaatgcgacgaatcctgg
accggcaagttcctgaaaccgatgctatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (20)   
   Pfam (20)   
All databases (27)   

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