KEGG T03712: BF29

Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_289

Entry

BF29_289          CDS       T03712

Symbol

ligD

Name

(GenBank) DNA ligase D

K01971

bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]

Organism

bcoa Heyndrickxia coagulans DSM 1 = ATCC 7050

Pathway

bcoa03450

Non-homologous end-joining

Brite

KEGG Orthology (KO) [BR:bcoa00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BF29_289 (ligD)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcoa03400]
    BF29_289 (ligD)
Enzymes [BR:bcoa01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BF29_289 (ligD)
DNA repair and recombination proteins [BR:bcoa03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BF29_289 (ligD)

SSDB

Motif

Pfam:

LigD_Prim-Pol DNA_ligase_A_M RNA_ligase

Other DBs

NCBI-ProteinID:

AJH79164

Position

complement(290339..292180)

AA seq 613 aa
MKPMLPVLKWSLPDTGKWAYEIKYDGYRAILDWTKGGMRLWSRNGKDLLPQFPEIRTFLQ
TLEGRVKGQLPLRLDGELVLLENPYKAGFRELQRRGRMKAKAAAEKAKVRPAHYLVFDLL
MLGGEDMAGKPYLQRKKVLEKFCETLALPLSPAPGETARVQQIPFTRDAPALKETVKNFN
SEGIVAKQTDSKWEAGKRVETWIKVKNWKTAACFITAYDAKNGYFDAAVFKDGGIFPIGQ
FLFSMNPGEKQILAEAVRKNAANDENGVYTIDPSICVELFYLEWDGANLREPHFHRFRFD
LSPDACTFEDFRLRNAAIPEEVEVTHPDKPLWKKRHVAKLDFLAYMRKISPFILPFLSDR
LLTVIRYPNGVFGEAFYQKNCPDYAPVFVDTAMHEDIRYIVCNHLKTLMWLSNQLAVEYH
IPFQTVNSRFVSEIVFDFDPPSRNEFQLAVEAALLLKQVTDALHLESFVKISGNKGLQVY
IPLPDGQFSWEDTRLFTEFMAAYFVSKSPEHFTIERMKKKRGGKLYVDFVQHAEGKTIIA
PYSMRGHEDALVAAPLFWKEVNASLSPDHFTIETVLSRVDRYGCPFARFFACKNGQPFAP
VLAFLKQNKGRPI

NT seq 1842 nt +upstreamnt +downstreamnt
atgaaaccgatgctgccggttttaaaatggtctctgcctgatacaggaaagtgggcatac
gaaatcaaatatgacggttatcgcgcgatcctcgactggacaaaaggcggcatgcggtta
tggagccgcaacggaaaagatttgctgccccagtttccggaaatccgcacctttttgcaa
acacttgaaggccgcgtaaaagggcagcttccgttacggcttgacggcgaacttgtgctg
cttgaaaatccgtataaagctggctttagggagctgcagcgccgcgggcggatgaaagcg
aaggcagctgcagagaaggctaaagtgcgccccgcccattatctcgtatttgatttgctc
atgcttggcggggaggatatggccggaaaaccgtatttgcagcgaaaaaaagtattggaa
aagttttgtgaaacgcttgctctgccgctctcccccgccccgggcgaaacggcacgggtc
cagcagatcccgtttacccgtgacgcgcccgccttaaaggagacggtgaaaaattttaac
agtgaaggcattgtcgcaaaacaaacggacagcaagtgggaagcgggaaaacgggttgag
acatggataaaagtgaaaaattggaaaacagccgcctgctttattacagcttatgacgcg
aaaaacgggtatttcgacgcagcggtgtttaaagatggcggcatttttccaatcggccag
tttcttttcagcatgaatccgggcgaaaaacaaatcctcgcagaagcagtcaggaaaaat
gccgcaaacgatgaaaacggcgtctatacgatcgatccttcgatttgcgtcgagttattt
tatttggaatgggacggcgccaacctgcgggaaccgcatttccaccgcttccgctttgat
ctttccccggatgcctgtacatttgaagatttcaggctccgtaacgccgccattccagaa
gaagtggaagtgacacatccggataaaccactatggaaaaaacggcatgtggcaaaactc
gactttcttgcttatatgcggaaaatttccccttttatactgccgtttctttcagacaga
cttttgaccgtcatccgttacccgaacggcgttttcggcgaagcattttaccagaaaaac
tgccccgattatgcgcccgtttttgtggatacggcgatgcatgaagacatccggtatatt
gtctgcaaccatttgaaaacactgatgtggctttcaaaccagcttgcggtggaataccat
atcccgtttcagaccgtaaacagccgttttgtcagcgagattgtatttgattttgacccc
ccttcccggaatgaatttcaacttgcagtagaagcagctttgctattaaaacaggtgacg
gatgcccttcatttggagagctttgttaaaatttccggcaataaagggctgcaagtctat
attccattgccggacgggcagttttcatgggaagatacaaggctgttcacggaatttatg
gctgcttatttcgtttcgaaatcgcctgaacattttacaatcgaacggatgaagaaaaag
cggggcggaaaattgtatgttgatttcgtccagcatgcggaaggaaaaacgatcattgcg
ccttattcgatgcgggggcatgaggatgcgcttgtggcggcgccgcttttctggaaagaa
gtaaacgcgtcgctttccccggatcactttaccattgaaacggtcctttcgcgcgtggac
cggtacggctgcccgtttgcgcgattctttgcctgcaaaaacggccagccttttgccccg
gtacttgcatttttaaagcagaacaaagggcgacccatatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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