KEGG   Bdellovibrio sp. NC01: DOE51_07315
Entry
DOE51_07315       CDS       T06360                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
bdc  Bdellovibrio sp. NC01
Pathway
bdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DOE51_07315 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdc03019]
    DOE51_07315 (pnp)
   03016 Transfer RNA biogenesis [BR:bdc03016]
    DOE51_07315 (pnp)
Enzymes [BR:bdc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     DOE51_07315 (pnp)
Messenger RNA biogenesis [BR:bdc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DOE51_07315 (pnp)
Transfer RNA biogenesis [BR:bdc03016]
 Prokaryotic type
  tRNA degradation factors
   DOE51_07315 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 DUF3016 S1_2
Other DBs
NCBI-ProteinID: QDK37408
UniProt: A0A514WV71
Position
1521111..1523207
AA seq 698 aa
MKTTVTTSVGGKQITIETGRLAKQADGSALVTCGNNMVLVVATSSKKASELDFFPLTVEY
IEKYYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQVVATVLSADGA
FPLEILASLGASAALHTSDIPFNGPTAAIQVARVDGQLVANPTPQQMEKSDMDLIVAGTR
NGLLMVEGETKFISEADVMAALKFGHQSMMPLLNAQDELREKIGSKAKRAFVAPAIDADF
RTAAESILKPKIAAALAIREKQDRYAAANAAAAEAEKSLLSAITDKDLLKQRKKELNTIV
EELKYHEARSMILDRKVRIDGRDVKTVRPIANEVGLLPRAHGSGLFTRGETQVLGTVTLG
TGDDEQMVDSLMGLQKRKFLLHYNFPPYSVGEVGRMGGLGRREIGHGNLAERAIKAVLPD
HEKFPYTIRIVSEVLESNGSSSMGTVCSGTLALLDAGVPLKGNVAGVAMGLIKEGDRVAV
LTDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRSHILNEM
EKVIKTPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIEDDGTIHI
ASADPEATKKAIGMINDIVAEAEVGKVYKGRVVKIAEFGAFVEILPNTQGLLHISEIANE
RVRAVTDVLKEGETIDVKVLEVDRAGRIKLSRKALLNQ
NT seq 2097 nt   +upstreamnt  +downstreamnt
atgaaaacgactgtgacaacttcggtaggcggaaaacagatcactatcgaaacaggccgt
ttggcaaaacaagcagatggttctgctctagttacttgtggtaacaacatggttcttgtt
gttgcgacatcttctaaaaaagcctcagaactagatttcttcccactaacagttgaatac
atcgaaaaatactatgcgactggtaaaatccctggtggttacttcaaacgtgaagcaaaa
ccaacaaacgacgcagttttgatcgcgcgtttgatcgaccgtccaattcgtcctgtattc
ccagaaggctaccgtcacgaaactcaagtagtagcgacagttctttctgctgacggcgca
ttccctctagagattctagcaagtttgggtgcctctgcagctcttcacacttcagacatt
ccgttcaatggcccaacagctgcgatccaagttgcacgcgttgatggtcaacttgtagcg
aatccaactccacaacaaatggaaaaatcagacatggatttgatcgttgcgggtactcgc
aatggtttgttgatggttgaaggtgaaacgaaattcatctctgaagcagacgttatggct
gctttgaaattcggtcaccaatcaatgatgcctctattgaacgcgcaagatgaattgcgt
gaaaaaataggttcaaaagcaaaacgtgcattcgttgcaccagctatcgatgctgacttc
agaactgctgctgaaagcatcttgaaaccaaaaatcgcggcggctcttgctatccgtgaa
aaacaagatcgttatgctgctgcaaatgcggcggctgctgaagctgaaaaatctttgttg
tcagctatcactgataaagacttgttgaaacaacgtaaaaaagaattgaacactatcgtt
gaagagttgaaataccatgaagctcgttcaatgatcttggatcgcaaagttcgtatcgat
ggtcgtgacgtaaaaactgtacgtcctatcgcgaacgaagttggtttgcttcctcgtgcg
cacggttctggtcttttcactcgcggtgaaacgcaagtgttgggcacagtaactttgggt
actggtgatgacgaacaaatggttgattcattgatgggtcttcaaaaacgcaagttcttg
cttcactacaacttccctccatactctgtaggtgaagtgggtcgtatgggcggtttgggt
cgtcgtgaaattggtcacggtaacttggctgaacgcgcgatcaaagcagttcttcctgat
cacgaaaaattcccatacacaatccgtatcgtatctgaagttttggaatcaaacggttct
tcttcaatgggtacagtgtgctctggtactctagcacttcttgatgctggtgttcctttg
aaaggtaacgttgccggtgtggcgatgggcttgatcaaagaaggcgaccgtgtagcagta
ttgactgacatcttgggtgacgaagatcacttgggtgacatggacttcaaagttgctggt
tctcctgcaggtatcactgctttgcaaatggatatcaaaattgactctgtttctttcgaa
gtgatggaacaagctttggcgcaagctaaagaaggtcgttcgcacatcttgaacgaaatg
gaaaaagtgatcaaaactcctcgtggtcaaatctctgaatttgctcctcgtatcgagacg
atcaaaattaaaccagataaaatccgtgaagttatcggttctggcggtaaagttatccgc
ggtatcactgaagcgactggcgttaagatcgagatcgaagatgatggtacaatccacatc
gcgtctgcagatcctgaagcgactaaaaaagctatcggcatgatcaacgacatcgttgct
gaagctgaagttggcaaagtgtacaaaggccgtgttgttaagatcgctgagttcggtgca
tttgttgaaatcttgcctaacacgcaaggtttgttgcacatctctgagatcgctaacgag
cgcgttcgtgcagtaactgacgttcttaaagaaggcgaaactatcgacgtgaaagttctt
gaagtagaccgcgctggtcgtatcaagctttctcgtaaggcgcttcttaaccaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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