KEGG   Brachypodium distachyon (stiff brome): 100832556
Entry
100832556         CDS       T01717                                 
Name
(RefSeq) THO complex subunit 5A isoform X2
  KO
K13174  THO complex subunit 5
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100832556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100832556
   03041 Spliceosome [BR:bdi03041]
    100832556
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100832556
Spliceosome [BR:bdi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100832556
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 100832556
NCBI-ProteinID: XP_003570564
UniProt: A0A0Q3QJK7
Position
3:57315532..57320419
AA seq 795 aa
MASETAAEAMDVEAPVRPSTTTAAAPKHRCPHDLLAETRASVEEVAARILAIKKDGAPKS
ELRELVAQMSLLLITLRQVNREILMEEDKVKAQTEAAKAPVDSTTLKLHNLLYEKNHYVK
AIRSCLDFQTKHPGIDLVPEEEFHRSAPADIRDKTLAADAAHDLMLKRLNFELVQRKELC
ERHEKLEQQKSSLLGAIANQKKFLSSLPSHLKSLKKASLPVQQQLGMLHTKKLKQHHAAE
LLPAPLYITYTQLLGQKEAFGDNIEVEINGSTKDAQTFALQQAKQENGTLSNDDRMDDDA
IDDEEDAQRRRSRSRKNSKEASNPALAYQLHPLKVVLHVYDTEDSGTKRLKLITLRFEYL
AKLNVVCVGPEDSEGMDNNILCNLFPDDTGLELPHQMAKLYVGKTPQFSEKDSRPYKWAQ
HLAGIDFLPEVPLSVGDDSNRALRSADLSSGLALYRQQNRAQTILQRIRSRKTAQMALTW
QLSYLTKLRWPQIEHENTPWASRTPLCSMHSWSLTGFSPEPSARSALMPTEPAGSADSDM
ERRSVTNGQETESIREDGELPVVVRAEHMLNGSKASHSEVPPEVRNHSRGLSLISKSSTP
SKLTISHSFGRNEDDLDFLMDSDSELEELTCADQETEQGSLTIDKSWEDYASREFTMVLS
KTLKNGPKVMLEAKIKISMEYPLRPPLFRLQLLSEKTEALKCHNDLRAMEAEVNLHILRI
MPSSYEDYILTHQVLCLAMLFDMHFDEDHEKRKVTSVIDVGLCKPVSGTMLTRSVRGRDR
RQTIYWRGADCSSYL
NT seq 2388 nt   +upstreamnt  +downstreamnt
atggcgtcggagacggcggcggaagccatggacgtcgaggcaccagtccggccgtccacc
accaccgccgccgcaccaaaacatcgctgccctcacgacctactagcggagacccgcgcc
tccgtcgaggaggtcgccgcccggatactcgccatcaagaaggacggcgccccaaagtcc
gagctccgcgagctcgtcgcccagatgtccctcctcctcatcacgctccgccaagtgaac
agggagatactgatggaggaggataaggtgaaggcgcagacggaggcggcaaaggcgccg
gtggactccacgacgctgaagctgcacaatctgctgtacgagaaaaaccactacgtgaag
gccataaggtcgtgcctcgacttccagacgaagcacccgggcattgacctggtgcccgag
gaggagttccaccgctccgcgccagctgacatccgtgacaagacgcttgcggctgacgct
gctcacgaccttatgctcaagcgtctcaactttgagctcgtccagcgtaaagaactatgc
gagcgtcatgagaaattggaacaacagaagagcagcttgctaggggcaattgcaaatcag
aaaaagtttctttcaagcctcccgtcacatttgaaatcactgaagaaagcatcattgcca
gtgcagcagcagctggggatgctgcataccaagaaactaaagcagcaccatgcagcggag
ttgctcccagctcctctttatataacttacacccagctgttaggacagaaagaagcattt
ggagataatattgaagtggagatcaatggaagcacaaaggatgctcaaacttttgctctg
caacaggccaagcaggaaaatggcactctatcaaatgatgataggatggatgatgatgca
attgatgacgaagaagatgctcagagaagaagatcaaggtccaggaagaattcgaaggaa
gctagtaatcctgcattggcgtatcaacttcatccacttaaagttgttctccatgtatac
gatactgaagattctggaaccaagcgtcttaaactcatcaccctgaggtttgagtacttg
gcaaagttgaatgttgtctgcgttgggcctgaagattcagagggaatggataacaatatc
ctgtgcaacctatttccagatgacactggtttagagctgcctcatcagatggctaagctt
tacgtcgggaagactccccagttcagtgaaaaggattcacgtccatacaagtgggcacaa
catctagctggtatagatttcttgccggaagttcctctgtctgttggggatgattctaac
agagcattgagaagtgctgatttgtcatctgggcttgcactataccgtcagcagaatcgt
gcgcagactattttgcagagaatccgctcccggaaaactgcacaaatggctctcacgtgg
caacttagttatttaactaagctgaggtggcctcagatagaacacgagaatacaccgtgg
gcatcacgcaccccattgtgtagtatgcatagttggtcattgacagggttttctcctgaa
ccgtcggctcgttctgctttgatgcctactgaacctgcagggagtgctgacagtgatatg
gagagaaggtctgtgacaaacgggcaggaaactgagagtatcagggaggatggtgagctt
ccggttgtggttcgtgctgaacatatgctaaatggttctaaagcgtcacactcagaggtc
ccgcctgaagttcgaaaccattctagaggcttatcccttatatcaaagagctccacacca
tcaaagctaaccatctcacacagttttggcagaaatgaggatgatcttgatttcttaatg
gacagtgacagtgagttggaggagttgacatgtgctgaccaagaaactgaacaaggtagc
ctcactatagataaatcctgggaggactatgcttccagggagttcaccatggtcttgagt
aaaactttgaaaaatggtccaaaagtcatgctggaagccaagatcaaaattagcatggaa
taccctcttaggccaccacttttcagattgcagttgctttctgaaaagaccgaagcttta
aaatgtcacaatgatctccgtgcaatggaagctgaggtgaatcttcacatcctccgaata
atgccttcgtcatatgaggactatatattaacccaccaggttctgtgcctggctatgtta
tttgatatgcattttgacgaggatcacgagaaaagaaaagttacttcggtgattgatgtt
gggctctgcaaaccagttagtggaactatgcttactagatcagttaggggaagagatcgc
agacagactatctattggcgaggtgctgattgctctagttacttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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