KEGG   Bdellovibrio sp. qaytius: CIK05_04350
Entry
CIK05_04350       CDS       T05880                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bdq  Bdellovibrio sp. qaytius
Pathway
bdq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bdq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CIK05_04350 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdq03400]
    CIK05_04350 (ligD)
Enzymes [BR:bdq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIK05_04350 (ligD)
DNA repair and recombination proteins [BR:bdq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CIK05_04350 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AZZ36052
UniProt: A0A3T0RPF9
Position
complement(900345..902783)
AA seq 812 aa
MGLQEYRQKRDFKKTLEPRGRKISTKGQHIFVIQKHAASHLHYDLRLELDGVLKSWAIPK
GPSLNPNDKRLAVEVEDHPMDYAYFEGSIPLGEYGGGDVIVWDRGVWIPPKGALKALEKG
HLEFELRGEKLSGKFMLVRTRRMGSSKKSQWLLIKRHDQFVDEDHDILKKDKSVITGLSL
TNLERIKKKTKLIRSKLPAFIEPQLALLAETPPQGDNWIHEIKLDGYRTFCHKQKSNIKL
LTRSGLDWTSKYKFIEHECKKIKADSAMLDGEIVWTDNNGVSHFQGLQNSLENHHSDELF
YYVFDLLHLNGVDLRDTPLLQRKMLLKKLLVESGSKKILFSDFIKGDGKNVLKSACHLNL
EGIVSKDGKSTYQSGRNKNWIKSKCIKLQEFVIGGYTFQNKNKSLGSLLMGAYNAQGEFQ
YLGRVGTGFNSSESTKLLEKLRKLKSEKSFFTKGSPTSTAQDLRRELSFVKPNLVAQIEF
GAWTDEKILRHASFKGLRLDKKAKSVTIEEPALKKTTELSDIKLTNPDKVLFPKAKLTKK
QLYDYYKTIHKWMMPYVDHRPLSLLRGPNGVGKTCFFQKHAETNNVGLKAKKLTSGLKNK
TEEVLYVDSLKGILEMVQMATLEIHSRGCHIHNIDQPDLIVFDLDPAPNVTFAKVKEAAL
ALKDLLDRLKLKSFALVSGGKGLHLHVPIEAKYNFDEVKHFAKIVCEQLVNENPESFTTD
ISKAKRSKKIFLDYLRNGFGATAITPYSVRAQTEATVAFPITWPQLKKVTSAKEFTVDKV
LKILKKSKDPWTGYFRLKQKLALLDKLNSQLH
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgggtttacaagaataccgccagaagcgcgactttaaaaaaactcttgagccgcgtgga
cgaaaaatttctacaaagggccaacatatttttgtcatacaaaaacatgcagcctcgcat
ctgcattatgatttgcgtttagagttagatggcgttttaaaaagctgggccatacccaaa
ggcccatcattaaacccaaacgataaacgattggccgtcgaagtcgaagaccacccaatg
gattacgcttattttgaaggaagtatccctttaggtgaatacggtggtggcgatgtgatt
gtgtgggatcgtggggtgtggattccacctaaaggtgcactgaaggctcttgaaaaaggg
caccttgaatttgaactacgtggagaaaaactatctggtaaatttatgctggtacgaact
cggcgcatgggttcatccaaaaaaagtcagtggcttttaattaaacgccatgatcaattt
gtcgatgaagatcatgatattttaaaaaaagataaaagcgtgatcaccggtttaagctta
acaaatcttgagcgaataaagaaaaaaacaaaactcatcagatcaaaactccccgccttt
atcgaaccgcagttagccttgctggcagaaactcccccgcagggtgacaactggattcat
gaaattaaacttgatggctatagaacattttgccataagcaaaaatctaatattaaactt
ttaactcgctcgggccttgattggaccagcaaatataaatttattgaacacgaatgtaaa
aaaataaaggctgactccgcgatgcttgacggagaaattgtatggactgataacaacgga
gtcagccactttcaaggtttgcaaaattcattagaaaaccatcatagcgatgaattattt
tattatgtttttgatctgctgcatttaaacggagtcgatctgcgcgatacgccgcttttg
caaagaaaaatgctgcttaaaaaacttttagtagaaagtggttcaaaaaaaattctcttc
agtgattttataaaaggtgatggcaaaaatgttcttaaatcggcgtgtcacttaaaccta
gaaggcattgtttcaaaagacggtaaaagcacctaccaatcaggtcgcaataaaaactgg
attaaaagtaaatgcatcaaattacaagaatttgtcattggcggatacacttttcaaaat
aaaaataaatccttaggatcactcttaatgggagcctacaacgcccaaggcgagtttcag
tatctaggacgcgtaggaactggttttaattcaagcgaaagcacaaaacttttagaaaag
ttaagaaaactaaaatcagaaaaaagttttttcactaaaggctcacctacaagtaccgca
caagatcttagacgtgaattaagttttgtaaaaccaaacttagtcgcacaaattgaattc
ggtgcctggacagatgaaaaaatattaagacatgcgtcctttaaaggattacgtttagat
aaaaaagcaaaatctgtaaccatcgaagaaccagctcttaaaaaaacaaccgagctttct
gatattaaacttacaaaccctgataaggtgttatttccaaaagcgaagcttacaaaaaaa
cagctctacgattattataaaactattcataaatggatgatgccttatgttgatcaccgt
ccgctatcgcttttacgcggcccaaatggcgtcggtaaaacctgcttctttcaaaaacac
gccgaaaccaataacgtaggtcttaaagccaaaaaactaacttcgggtttaaaaaataaa
actgaagaagttttatatgttgattcacttaaaggaattttagaaatggtgcaaatggca
acccttgagattcattcacgtggttgtcacattcacaacatcgatcaacctgatttaatc
gtgtttgatttagacccagcccccaacgtgacttttgcaaaagttaaagaagcagcattg
gctttaaaagatctgctcgatcgattaaaattaaaaagttttgcgcttgtgagcggaggc
aaaggtttacatcttcatgtgcctatcgaagctaaatataatttcgatgaagtaaaacat
tttgcaaaaatagtttgtgaacaactggtgaatgaaaatccagaaagttttacgactgac
atttcaaaagcaaaaagaagtaaaaaaatattcttagattatttgcgaaatggttttggc
gctactgcgattacaccgtattcagtcagagcacaaacagaagccacagtggcttttcca
atcacctggccacagttaaaaaaagtgacctcagccaaagaatttactgtagataaagtt
ttaaaaattctaaagaaatctaaagacccatggaccgggtactttagattaaaacaaaaa
ttagcattgcttgataaactaaatagtcagctgcactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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