KEGG   Brachybacterium faecium: Bfae_07930
Entry
Bfae_07930        CDS       T00965                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
bfa  Brachybacterium faecium
Pathway
bfa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Bfae_07930
  09124 Replication and repair
   03420 Nucleotide excision repair
    Bfae_07930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bfa03021]
    Bfae_07930
   03400 DNA repair and recombination proteins [BR:bfa03400]
    Bfae_07930
Enzymes [BR:bfa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Bfae_07930
Transcription machinery [BR:bfa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Bfae_07930
DNA repair and recombination proteins [BR:bfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Bfae_07930
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: ACU84648
UniProt: C7M9V4
Position
complement(899745..901412)
AA seq 555 aa
MTDGPLIVQSDKSLLLEVDHPSAQAARIAIAAFAELERAPEHVHTYRITDLGLWNARAAG
YDAESVVAALVDHSRYPVPHALLIDVADTMDRYGRLQLRSDPTHGLVLHALDRPVLEEVA
RAKRIQGMLGARLDDSTVVVHPSERGALKQALLKLGWPAEDHAGYVDGEAHPISLAEDGW
SLRPYQAEAVDGFRHGGSGVVVLPCGAGKTIVGAGAMAAMGRTTLILVTSTVSARQWKQE
LLRRTTLTEEEIGEYSGAAKEVRPVTIATYQVLTMKRKGVHPHLELMSARDWGLIVYDEV
HLLPAPVFRMTADLQARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWRDIEAQGYIAP
AVCTEVRATMPSADRMAYAMAEAADRPRLGAAHPGKIDVVERIAQRHAGEPMLVIGQYID
QLEEIAERLGADLITGQTPVRRRQELFDAFREGRIDRLVVSKVANFSIDLPEASVAVQVS
GAFGSRQEEAQRLGRLLRPKADQRTAHFYTVVMRDTQDQDYAAHRQRFLAEQGYAYTIVD
AEELGRSTAAGRGAD
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaccgacggccccctcatcgtccagagcgacaagtccctcctgctcgaggtcgaccac
ccctcggcgcaggccgcccggatcgcgatcgccgccttcgccgagctcgagcgcgccccc
gagcacgtgcacacctaccgcatcaccgacctggggctgtggaacgcccgggccgcgggc
tatgacgcggaatccgtggtcgccgcgctcgtggaccactcccgctatcccgtcccccac
gcgctgctcatcgacgtggcggacacgatggaccgctacggccggctccagctgcgctcg
gatccgacccacggcctggtgctgcacgccctggaccggccggtgctcgaggaggtcgcg
cgggcgaagcgcatccaggggatgctcggcgcccgcctcgacgactccaccgtggtggtc
cacccctcggagcggggcgcgctgaagcaggcgctgctgaagctgggctggccggcagag
gaccacgccggctacgtggacggcgaggcgcatccgatctccctcgccgaggacggctgg
tccctgcgcccctaccaggcggaggcggtggacggcttccgccacggcggcagcggcgtg
gtggtgctgccgtgcggggcgggcaagacgatcgtcggcgcgggggcgatggccgcgatg
ggccgcaccaccctgatcctggtgacctcgaccgtctccgcccggcagtggaagcaggag
ctgctgcgccgcaccaccctcaccgaggaggagatcggcgagtactccggggccgccaag
gaggtgcgccccgtgacgatcgcgacgtaccaggtcctcaccatgaagcggaagggcgtc
cacccgcatctggagctgatgagcgcgcgggactggggcctgatcgtctacgacgaggtg
cacctgctgccggcgccggtgttccgcatgaccgcggacctgcaggcccgccgccgcctc
ggcctcaccgccacgctggtgcgcgaggacggccgcgagggcgaggtgttctccctcatc
ggccccaagcgctacgacgcgccgtggcgggacatcgaggcgcaaggctacatcgccccc
gcggtctgcaccgaggtgcgcgcgacgatgccctcggcggacaggatggcctatgcgatg
gccgaggccgcggaccggccccgcctgggtgccgcccatcccgggaagatcgacgtcgtg
gagcggatcgcacagcggcacgcgggcgagccgatgctggtgatcggccagtacatcgat
cagctcgaggagatcgcggagcggctgggcgcggacctcatcaccgggcagaccccggtg
cgccgccggcaggagctgttcgatgccttccgggagggccggatcgaccgtctggtcgtc
tcgaaggtcgcgaacttctcgatcgacctgccggaggcgtccgtcgcggtgcaggtcagc
ggagccttcggctcccgccaggaggaggcccagcggctcgggcggctgctgcggcccaag
gccgaccagcgcaccgcgcacttctacaccgtggtcatgcgcgacacccaggaccaggac
tacgccgcccatcgccagcgcttcctcgccgaacagggctacgcgtacacgatcgtggac
gccgaggagctgggacggtcgacggcggcggggcgcggcgctgactag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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