KEGG   Branchiostoma floridae (Florida lancelet): 118427234
Entry
118427234         CDS       T01074                                 
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
  KO
K06237  collagen type IV alpha
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512  ECM-receptor interaction
bfo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:bfo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118427234
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    118427234
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:bfo04147]
    118427234
   00536 Glycosaminoglycan binding proteins [BR:bfo00536]
    118427234
Exosome [BR:bfo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   118427234
Glycosaminoglycan binding proteins [BR:bfo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118427234
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 118427234
NCBI-ProteinID: XP_035692772
UniProt: A0A9J7M0Z3
Position
12:complement(12467855..12508059)
AA seq 1811 aa
MKFRDVLERHVLTSLAVVLILACCIQLSAAAACEGCSGKCVCNGTKGTKGERGLPGLQGP
PGLPGFQGLEGPPGPKGLLGARGNQGAMGPKGIRGAQGIPGFAGVPGIPGLPGLEGPMGP
PGLDGCNGTKGDLGPRGNPGPAGRGGTPGLPGLDGPKGEPGESGGAGEGIKGDRGDVGRN
GLPGPPGLNGLPGPQGDRGLEGSKGFPGPRGFQGEKGDMGLGFQGPKGAKGEGGLPGPPG
PPGILGEQVGLPGQIFAQKGQKGEAGAAGPIGFQGQKGEPGLAGPPGAPGGGGGCPSVGC
PYGCPVGCPGYPAPQGQRGPKGEPGRPGSPGLPGQTGPPGPFGFNGQKGDPGQPGTSGGP
GFVGQKGEPGLPGRAGAPGAPGAATAGGRPVPGPQGAPGRPGGSGFPGQKGEPGLPGFGG
PKGYPGPAGRPGPPGRPATGGQSFPGAPGEPGVPGRDGPQGPPGGGGMPGQKGEPGLPGA
TVGGGVGPPGRPGGPGFPGAKGDRGNPGAPGLPGAPGQAIGGVGPQGPMGPPGEPGRPGG
PGRPGGSGTPGFPGPKGEPCGGCPPGFPGPKGDRGFPGPPGQTVGGGQPGTPGFPGAKGE
PGFPGGRGLDGPPGPAGRPGAPGFPGVKGEPGFVSPQPGTPGFPGPKGDPGMPGQPGGPG
RDAVGGLVGPPGTPGFPGAKGEPGNPGFDGGPGQPGNPGRPGPQGPPGLATGGGIGAPGP
KGDAGFPGAPGTPGFPGQKGEPAIGSSQIGAPGPIGMPGPPGPPGLNGPPGLPGGPGGPG
QPGMDGFPGQKGEPGLPGGTGPGGQGLPGAKGEPGVPGFPGPKGDPGFPGGPGQPGGAGF
PGQKGEPGFSGGGGLPGPPGPPGGNGFPGPKGDAGFPGGPGSLGPPGQPGPPGPPGMPGN
PGLDGFPGPKGEAGRGSGGFPGPQGPPGPPGPPGGGGFPGQKGEPGLPGFGGVGAKGDPG
RDGAPGEPGLGGPPGLPGPRGLDGGPGFPGPKGEMGVMGLPGGPGPMGPPGPAGFGGPKG
EPGIPGGPGQPGGPGFPGQKGEAGFPGGPGLPGPPGPPPPAGLRGPKGDPGFPGQDGQPG
TVGFPGPPGPKGNPGLGGPPGPPGFPGAKGEGGIPGSPGNPGFPGTKGEPGIPGRPGGPG
FKGDPGFPGGPGQPGNPGLPGMKGEPGFGGAIPGPPGLPGRKGEPGRSGGSGFPGAKGEP
GRPGGPGQPGRDATSAARGAPGPPGTPGIPGAKGDRGNPGPPSGPGRPGPQGPPGFPGPK
GEPGIPGGPGRDGGPGSPGFPGQKGEPARAGPGLQGPPGIPGGKGEAGLPGPPGRPGFPG
AKGESGVPGGPGFGGPPGPPGPPGQGGFGQKGEAGIPGGPGRDGGPGPMGSPGNPGRSGF
PGQKGEPGPMGPPGRSVSGGLPGPPGPMGTPGSPGFPGSKGERGSPGIGGFQGAKGDRGS
PGNPGGPGQPGNPGFSGLPGPKGDPGLPGPPAVGLKGEPGFPGGPGQPGSPGSDGLPGPP
GSPGFPGPKGNPGLPGRSGFPGTKGNPGAPGLQGPPGTSGPPGPPGFPGQAGAPGASGGN
QGFIFARHSQTTQLPECPRYTSKMMDGYSLLYTQGNERTHGQDLGTAGSCLRRFSVMPFL
FCNINNQCQVASRNDYSYWLSTPEPMTMSMAPIRGRAIEPYISRCVVCEAPAQVLAIHSQ
ALTIPPCPNGWSSLWMGYSFVMHTGAGAEGTGQALASPGSCLEDFRSSPFIECHGRGTCN
YYATTYSFWLTTVEQGAEFRTPNPETLKAGNLRQRISRCQVCMRYQPPRGDTGFSGPRPF
GSEAESITGGK
NT seq 5436 nt   +upstreamnt  +downstreamnt
atgaagtttcgagacgtgttagaaagacacgtcttgacatcgttagcggtggttctgata
ctggcctgctgcatccagctatcagcggctgcggcatgtgaaggctgttcaggaaaatgt
gtttgcaatggaacaaaaggaaccaagggtgaaagaggactaccaggtctacaaggacct
cccggattaccaggattccaaggactagagggaccaccaggaccaaagggactactgggc
gcaagaggaaaccaaggtgctatgggaccaaagggaatcaggggtgcacaaggcattcca
ggctttgctggtgttccaggaattccaggtttgccaggactggaaggacccatgggtccg
cctgggttggatggctgcaatggaacaaaaggagatctcggacccagaggtaacccaggc
ccagcaggaaggggtggtactccgggcttgcctggacttgatggaccaaaaggtgaacca
ggtgaatctggtggtgctggagaagggatcaagggagacagaggtgatgttggcagaaat
ggactacctggcccacctggacttaacggacttcctggcccacaaggagacaggggactt
gaaggctcaaagggcttccctggtcccagaggcttccaaggagagaaaggtgacatgggc
ttgggcttccaaggaccaaagggagctaagggtgagggtggtcttcccggcccacctgga
cctcctggcattctaggagaacaagtcggactccccggacaaatctttgctcaaaaggga
caaaagggtgaagcaggagcagcaggacccattggtttccaaggccagaagggagagcca
ggccttgcaggaccccctggtgccccagggggaggcggaggctgtccatccgttggttgc
ccttatggctgtccagtgggctgtcctggatacccggcaccccaagggcaaagagggccc
aaaggtgaacccggacgccccggaagtcctggtctccctggccaaactggaccacccgga
ccctttggcttcaacggacaaaaaggtgaccccggccaacctggcacctctggcggccct
ggctttgttggacagaagggagaaccaggccttcctggtagagctggtgcaccaggagca
cctggtgcagctacagctggtggcagaccagttcccggaccccagggtgccccaggaaga
cctggaggtagtggattccccggacagaagggagagccaggtcttcccggctttggcggc
cccaaaggttaccccggccccgctggtcgtcccggcccacctggtcgccctgctactggt
ggtcaatccttccctggtgcccccggagagccaggtgtcccaggacgtgatggaccccag
ggcccacccggcggtggcggaatgcctggtcagaagggagaacccggtctgcctggagca
actgttggtggcggtgtaggcccacccggacgccctggtggtcccggattccccggtgct
aagggagatagaggaaaccccggtgctccaggtctgcctggtgcacctggccaggccatc
ggaggagttggtccacagggcccgatgggtccacctggagaacccggccgccctggcggt
cctggccgtcccggcggatctggaacacctggattcccaggtcccaaaggagagccatgt
ggcggctgcccacctggcttccccggacccaagggagatcgtggattccccggcccacct
ggtcagactgtaggtggaggacaacctggcacgccaggcttccctggtgccaagggtgaa
cccggattccctggtggtagaggtttggatggtccaccgggcccagctggccgtcccggc
gcccctggcttccctggtgtgaagggtgaacctggctttgttagtcctcaacctggaact
ccaggcttccccggacccaagggtgatcctggcatgcctggtcagcctggtggtcctggt
cgtgatgctgtcggtggtctggttggacctcctggaactccaggcttccctggagcaaag
ggtgaacctggcaaccctggttttgatggaggacccggtcagcctggtaatcctggccgt
cccggcccacaaggaccgcccggtttagcaacaggtggtggcatcggtgccccaggcccc
aagggtgatgctggtttccctggtgcccctggtacacctggcttcccaggccagaaagga
gaacctgccattggctcatcccagattggcgcacctggtcctattggtatgccaggccca
cctggtccacctggtctgaacggtcctcctggacttccaggcggccctggtggtcccgga
caacctggtatggatggcttccctggacagaagggtgaacctggtcttcctggcggcact
ggtcctggtgggcaaggtctgcccggtgctaagggagagcctggtgtgcccggcttcccc
ggtccgaaaggagatcctggttttcctggcggtcccggtcagcctggcggtgctggattc
cctggacagaagggtgagcctggcttcagtggtggtggcggacttcccggaccccccggc
ccccctggaggaaatggattccccggacctaagggagatgctggcttccccggaggccca
ggatcacttgggccccctggacagcctggcccacctggacctcctggcatgcctggtaac
cctggtttagatggcttccctggccctaagggtgaggccggtcgtggctctggaggcttc
cctggacctcaaggaccccctggaccacccggaccccctggtggtggtggattccctgga
cagaagggagagcctggtcttcctggatttggtggtgttggtgcgaagggtgacccaggg
cgtgacggagctcccggtgaacctggcctgggcgggccacctggactgcctggaccacgc
ggtttggatggaggccctggcttccctggaccaaagggagagatgggtgtcatgggtctg
cctggtggacctggacctatgggaccccctggtcctgctggatttggtggccccaaggga
gaacctggtattcctggcggccctggtcagcctggaggccctggtttccctggacagaag
ggtgaagctggattccctggaggccctggactgcccggtccacctggacccccaccgccc
gctggactgagaggaccaaagggagacccaggattcccaggtcaggacggtcagcctggt
actgttggtttccctggcccacctggtcccaagggtaaccctggccttggcggtccacct
ggcccacctggcttccctggtgctaaaggagagggtggaatccctggctcacctggtaac
cctggcttccctggaacaaagggtgaacctggtatccccggacgcccaggcggacctggc
tttaagggagacccaggcttccccggaggccctggacagcctggcaacccaggcctccct
ggaatgaagggtgaacccggctttggtggtgccatccccggaccccccggccttcccgga
cgcaagggtgagcctggcaggtcaggaggcagtggcttccctggagctaagggcgagccc
ggcagacctggaggacctgggcagcctggcagagatgccacctctgctgcccgtggagcc
ccaggacccccaggaacccctggaatccccggtgcaaagggagatagaggcaaccccggc
ccacccagtggtcccggccgtcccggtccccagggtcctcctggcttccccggtcctaag
ggtgaacccggtattcctggcggtcctggtcgtgatggcggccctggctcacctggtttc
cctggtcagaagggcgagcccgctagagctggtcctggactgcagggtcctcctggaata
cctggtggtaaaggagaagctggtctacctggcccccctggccggcctggattccctggt
gctaagggagagtctggtgttcctggtggccccgggttcggcggcccacctggtccacct
ggcccacccggacaaggaggatttggacagaagggagaggctggtattcctggtggtcct
ggccgtgatggtggtcctggtcccatgggctcccctggcaaccctggtcgctctggattc
ccaggacagaagggagaacctggtccgatgggtcctcctggcaggagtgtctcaggagga
ctgcctggcccacctggccccatgggtacccctggatcccctggcttccctggatcaaag
ggagaacgtggatcacctggcattggtggattccaaggagcaaagggagaccgcggatcc
cctggcaatcctggaggccctggccaacccggaaaccctggtttctctggtctgcccggt
cctaagggtgatcccggcctgcctggcccaccagctgttggtctgaagggagaaccggga
ttcccaggaggcccaggccagccaggttccccaggctctgacggcctgcctggcccacct
ggttctcctggattcccaggtcccaaaggaaacccaggtcttcctggaagatctgggttc
ccaggaaccaaaggaaaccctggtgcccccggtctgcaaggtccccctggtacaagcggt
ccccctggtcctcctggcttccctggacaggcaggtgccccaggtgccagcggtggtaac
caaggattcatcttcgcaagacacagtcagaccactcagctgcccgagtgcccacgatac
acctccaagatgatggacggatacagtttgctgtacacacagggcaacgagagaacacac
ggacaggatctaggcacggctggtagctgcttgagaaggttcagtgtcatgccattcctc
ttctgtaacatcaacaaccagtgccaggtggcatccagaaacgactactcctactggctg
tccacccccgagcccatgaccatgagcatggcgcccatccgtggccgcgccatcgagccg
tacatcagtagatgtgtggtgtgtgaagccccagcccaggtcctggccatccacagtcag
gccctgaccatcccaccctgtcctaacggctggagcagcttgtggatgggctacagcttt
gtcatgcacactggtgcaggtgctgagggcactggacaagcgctggcatcgccagggtct
tgcctggaagacttccgctcatcgccattcatagagtgtcacggcaggggcacgtgcaat
tactacgccaccacgtacagcttctggttaacaactgttgaacagggcgccgaattccga
acgcccaacccagaaactctaaaggctggtaacctgcggcagcgcatcagtaggtgccag
gtctgcatgcgttatcagcctccgcgaggagacaccgggttcagtgggccacgaccattc
ggttcagaagcagagagcatcacaggagggaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system