KEGG   Branchiostoma floridae (Florida lancelet): 118428502
Entry
118428502         CDS       T01074                                 
Name
(RefSeq) probable RNA-dependent RNA polymerase SHL2
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:bfo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bfo03036]
    118428502
Enzymes [BR:bfo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     118428502
Chromosome and associated proteins [BR:bfo03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     118428502
SSDB
Motif
Pfam: RdRP
Other DBs
NCBI-GeneID: 118428502
NCBI-ProteinID: XP_035694481
UniProt: A0A9J7M4A9
Position
13:complement(11819836..11826313)
AA seq 1424 aa
MSEPAFPLSVTVTLERSLDSDVRKSLDRFMKRNSRVVSETTLNSGQTWNQDAVRSTEFKV
QPRNANEYDTTEELFCFLRLEWCKLGHCIFGLGWLTPEEKTGVFDKTQRNTPTHSDIALK
TFALGAFRERSTFINHYDVSDHDSGSEDDSRGLERQVTFEHDRRQLVVHFKPCEDEDLHK
FEVDYDNLEDYILVDDSDAQTELYLFLKHPLKVFRATDPGNDCGVDRIDSVNTKTVWRRT
TSFAGCTRRDLGYSSCLQLVIENNDTVNSHAVLSRLCQSCGFTANYLSVHCIKPSALEQE
PSLTHFECVYALRVFLSRGYSVTDQVLVNQHFFQKLQDMEEDEERFGPRFVCEILRRLTL
TVESNRFADIDTTLRKLLAMRDIILEAEQSQYPAAHRMVRRVFVTPTRLMFMHPEIVRDN
RILRKYGEDNFMRVSIRDEDFCKLSAVGGEEETTFTRVKKFLQDGLLVGDRKYVFLAASN
SQLREHNVWFFASDGKNTAESIRKDMGDFSDIKCPATVLARMGQCFSNTEPSVTALISAG
EVVRIPEVKGGYPNVYCFSDGIGKISQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGV
VAVDPSLDSDVMEVRPSMMKFLSFDQQIEICMTSHPGRLYLNRQVITILSALGVPDQTFQ
QLQEAMLQNLSDMLVREDVAFESMKRRAQPLGLPLGRLSRCGLHVTTEPFFRAMLQKMFT
CFLGELRRRARIEIPPEYGRNMLGVLDETGTLEYGQVFVQYTEDITDKGGQTKVTGDVVV
TRNPCFHPGDLRKLRAVDIPSLHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYPG
LIFPKPNQGPMDFTAQPKKELPSVETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGI
FSSKCLGLAKKHSDAVDFPKTGVCPTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYR
ECLRIERVCSHLHKDKDTGGKNIEIDPDFTHKDRKRYAVSSRQAKDDFYDKLQDLMSQYG
IDTEAEAVSGCFVRMHHHMEDRYERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDSIDLD
HCPENVMAKASAWYHASYSTGNPNLLSFPWVVADVLAELKKRATRSSPIVEQPVFDRITR
DLDEVYGTQFYTTVMNVMGSRDDLHSRVLSYVLMYIRQYATAMHLVSFLLQWGKDQMIWG
EHYSQINQTNLLFLFVVNAVKQGFFEDLGMPTENEISKLRAFIRRTRENGYYDTRFMPEG
KCAGELCISFLRYLSSYGFLETTEVAIHGISQLLPGSARGNLHGKALVAYHLLAQTGDIR
RLASTMDTYKEIRWDMEIPPNLWSQYFYRHQREREQELSKETGAQQVHVRPLKRVPGPYR
GHLSAVGTEESITELQLVMDDLIDRYKNNHGRPWSRRRQSPKSR
NT seq 4275 nt   +upstreamnt  +downstreamnt
atgagtgaaccagcgttccccctgtccgtgactgtcacgttggaacggtccctagatagc
gatgttcgaaagagcttggaccgcttcatgaaaaggaactcccgtgttgtgtctgagacc
actttaaacagcggtcagacgtggaaccaagacgctgtccgtagtacagaatttaaagta
cagccacggaatgccaacgaatatgacacgacagaagaattgttctgtttcctgcgactg
gaatggtgcaaactcggtcactgtatattcggacttggatggcttactcccgaagagaaa
acaggtgtttttgacaaaacccagagaaacactcccactcactctgatattgcactgaaa
acatttgccctgggtgcttttcgagagagaagtacattcatcaaccactatgacgtgtca
gaccacgactctgggtctgaagacgactcgagaggtcttgagagacaggtgacctttgaa
catgaccggagacagcttgtggttcacttcaagccatgcgaagacgaagatcttcacaag
ttcgaagtggattatgacaacctggaggattacatccttgtcgacgacagcgatgcacag
acagaactgtacctcttcctcaaacatccactaaaggtattcagggcgaccgatccaggc
aacgactgtggtgttgacaggattgactccgttaatacgaagacagtttggaggcgtacc
acatcatttgcaggatgcacacgtcgagatcttggatattcttcctgtctccagttggtt
attgaaaataatgataccgtaaactcccatgctgtcctcagccgcctgtgccagagttgt
ggcttcacagcaaactatttgtccgtgcactgtatcaaaccttcagccctagagcaagaa
ccttcactgacacacttcgagtgtgtttacgcgctgcgcgtatttctctcgcgcgggtac
agtgtgacggaccaggtccttgtcaaccagcatttctttcaaaaactccaagatatggaa
gaagacgaagaacgattcggtccgaggtttgtctgcgaaatacttcgacggcttaccctg
actgtggaaagtaacagatttgcggacatcgacactacactacggaaactacttgccatg
agggacatcatcctcgaggcagagcagtcccagtacccggctgcccaccgcatggtgcgc
cgcgtcttcgtcacaccgacccgcctgatgttcatgcaccctgaaatagtgcgggataac
agaatccttcggaagtacggtgaggacaactttatgagggtgtccattcgggacgaagac
ttctgcaagctgtcagcagtaggaggcgaggaggagacgacatttacacgtgtcaaaaaa
ttccttcaggacgggctgttagtcggagacaggaaatacgtattcctagctgcctctaac
agccagcttagggagcacaacgtctggttcttcgcttcagacgggaagaatacagccgag
tccatcagaaaagacatgggagacttctctgacatcaaatgccctgctaccgtgcttgca
cgcatgggccagtgcttctccaacaccgagccaagtgtgactgccctgatctctgccggg
gaggtggtcaggatacctgaggttaaaggtggctatcccaacgtctactgcttctctgat
ggtattggcaagatatcacagtcactggcacagaaggtaaatgaacgtagagcgataggc
cgtggtgaaacagaagtaccatcagcctaccagatccggtacggaggagtcaagggtgtg
gtggcagtggatccaagtctcgacagtgatgtgatggaagttcggccgagtatgatgaag
tttctgtcctttgatcaacagattgaaatctgcatgaccagtcatccaggtcgactgtac
ctgaacaggcaggtgatcactatcctatcagcgttgggcgttcctgaccagacctttcag
cagctccaagaggcaatgctgcagaatctgtccgacatgcttgtgagagaggacgttgca
ttcgaatccatgaagagaagggcacagccactagggttacctttgggcagactgtcccgt
tgtggactccatgtcaccacagaaccgttcttcagggccatgctacaaaaaatgttcacc
tgcttcctcggagaactaagacgaagagcgagaatagagatcccacccgagtacggacgg
aacatgttgggtgtcctggacgagacaggcacactggagtacggacaagtcttcgtccaa
tacacggaggatatcacagacaaagggggccaaaccaaagtgacaggagacgtcgttgtt
acacggaatccgtgtttccacccgggagacctacggaaactcagggcagtcgacattccc
tcactgcatcatatggttgacgtcatcgtcttcccctccaaaggaccgcgaccgcatcca
aacgagatgtcgggaggagacctggatggcgaccagttcttcgtcacctggtatccaggt
ttgatattcccgaaacccaatcaggggcccatggacttcacggcacagccgaagaaagag
ctaccaagtgtcgaaacccatgacatcatagatttcattgtcgagtacattgcaaatgac
aggcttgggcagattgctaacgcacatctcgcttttgcgcacaccgagaaagaaggcata
ttttccagtaaatgccttggactagctaaaaagcattccgatgcagtcgattttccaaag
acaggagtatgcccaactttaaaaatggaagagagacctttggagtatccagattttatg
ggcaagaagaaagggaagacgtcaagacggtcagaggccgtccagggcaagatgtaccgg
gagtgtcttaggattgaacgggtttgcagtcatctacataaagacaaggacactggaggt
aaaaatatcgaaatagacccagatttcacacataaagaccgtaaacggtatgctgtgtct
tctcgtcaggctaaagacgacttctacgacaagctacaggatctgatgagtcagtacggg
attgacacagaagctgaggccgtatcgggatgcttcgtcagaatgcaccaccacatggaa
gaccgttatgagaggtttgaggcagaaagaatcgccaaggaccggatcgcccatcttcgc
aaacagaccagacaggaattctttgccgaattcggaggtgaagacagcatagacttagac
cattgtcctgagaatgtcatggcaaaagcgtccgcctggtaccacgcctcctacagcacg
ggtaatcccaatttgctcagcttcccatgggtggtggcagatgttctagctgagctgaag
aaaagagcaacacgctcttctccaatcgttgaacagccagtcttcgacagaatcacaagg
gatttagatgaagtgtacgggacacagttctacactaccgttatgaatgtgatgggttca
agagatgacttacacagtcgagttctatcgtacgtactgatgtacatacggcagtacgct
actgctatgcacctagtttcctttctcttgcaatggggaaaggatcaaatgatttggggt
gaacattattctcagattaaccagacaaatctactcttcctcttcgttgttaatgctgtc
aaacaaggcttctttgaagatttgggcatgccgacagaaaatgaaatttcaaaactgcgt
gccttcattcgacgaacaagggaaaatggttactacgacacgcgctttatgccagagggg
aaatgtgcgggagaactctgcatcagctttctgagatacttgagttcttacggattcctg
gagaccaccgaggttgctattcacggcatctcgcaactactgcccggtagcgccagaggg
aatctccacggtaaggcgctggtagcctatcacctgttggcacaaacaggagatattcgg
cgacttgcgagcactatggacacctacaaggaaatccgatgggatatggaaatacctccg
aacttgtggagccagtacttctacagacaccagagggagcgggaacaagagctgtcaaag
gagactggtgcacagcaggttcatgtccgtccactgaaacgagtcccaggaccgtaccgg
ggacatttgtctgccgttggtacagaggaaagcatcactgagctccagctagtcatggac
gacttgattgatagatacaagaataaccacggacgaccttggtcgcgacgtcggcaaagt
cccaaatctagatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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