KEGG   Paraburkholderia atlantica CCGE1002: BC1002_4002
Entry
BC1002_4002       CDS       T01217                                 
Name
(GenBank) helicase c2
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
bge  Paraburkholderia atlantica CCGE1002
Pathway
bge03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bge00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    BC1002_4002
  09124 Replication and repair
   03420 Nucleotide excision repair
    BC1002_4002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bge03021]
    BC1002_4002
   03400 DNA repair and recombination proteins [BR:bge03400]
    BC1002_4002
Enzymes [BR:bge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     BC1002_4002
Transcription machinery [BR:bge03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     BC1002_4002
DNA repair and recombination proteins [BR:bge03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     BC1002_4002
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD DUF3168 ResIII
Other DBs
NCBI-ProteinID: ADG18010
UniProt: D5WHR5
Position
2:complement(886922..889183)
AA seq 753 aa
MSYVVAVRAMCEFTARRGDLDLRFTPAPTSLEGIAGHQMVAGRRASGYETELTLTGTHRS
LTVRGRADGYDPIANRLEEVKTYRGDLARMPANHRVLHWAQALVYGHLLCQSRGLAELTV
ALVYFDIGSQKETVLTQQHSARELEIFFVEQCERFLDWAVQEDAHRVARNAALVNLQFPY
GQFRRGQRELAVAVYRAARDGKPLMAQAPTGIGKTLATIFPLLKACGEDRLDRMFFLTAK
TPGRALALDAIDSLHQSAALPLRTLELVARDKACEHPDKACNGESCPLARGFYDRLDAAR
SAALATPRLDRAAVREAALAHEVCPYYLAQELARWADVIVGDYNYYYDASAMLHALTQIN
QWRVGVLVDEAHNLLERARRMYTASLDQSAFRLARKSAPAALKKPLERLQREWNAVKRAQ
TASYQVYAAIPGKLLSAAQNLIGAVTDQLADAPLSIDEHALRFFFDAMHFVALAEQFGEH
SMFDVTVSADRFAPRDKTSATLCVRNVIPAPFLAPRYAAARTTVMFSGTLNPQHFYRDTL
GLADDTQWLDVEGPFRAEQLQVHVAAHVSTRWRDRERSLAPIVELIAKQYDAQPGNYLGF
LSSFDYLQRVVALLRERHPGLPVWAQEPGMDEAARDAFLARFRTMNQGIGFAVLGGAFSE
GVDLTGQQLIGAFVATLGLPQVNDVNEQMRRALDARFGNGYDYMYLYPGLQKVVQAAGRV
IRTEDDRGVVHLIDDRFRRPEVRRLLPRWWQVR
NT seq 2262 nt   +upstreamnt  +downstreamnt
atgagttacgtggtggccgtccgcgcgatgtgcgaattcaccgcgcggcgcggcgatctc
gatctgcgcttcacgcctgcgccgacttcgctcgaaggcatcgccggtcatcagatggtc
gcgggccgtcgcgcgagtggctatgaaaccgaactgacgctgacgggtacgcatcgcagt
ctgaccgtgcgtggccgcgcggacggctacgatccaatcgcgaaccggctcgaagaagtg
aagacctatcgcggcgatctcgcacgcatgcccgcgaatcatcgcgtgctgcactgggca
caggcgctcgtctatgggcatctgctgtgccagtcgcgcgggctcgccgagctgacggtc
gcgctcgtgtacttcgatatcggcagtcagaaggaaaccgtgctgacccagcagcacagc
gcgcgcgagctcgaaattttcttcgtcgaacagtgcgaacgatttctcgattgggccgtg
caggaagacgcacatcgcgtcgcgcgcaatgcggcgctagtcaacttgcagtttccgtat
gggcagtttcgccgcgggcagcgcgaactcgcggtggccgtgtatcgcgccgcgcgcgac
ggcaagccgttgatggcgcaggcgccgaccggcatcggcaaaacgctggcgacgattttt
ccgttgcttaaagcctgcggcgaagaccgtctcgatcgcatgttctttctgaccgcgaag
acgccgggccgcgcgcttgcgctcgatgcaatcgactcgctgcaccagagcgcggcgctg
ccactcagaacgctcgaactcgtcgcgcgcgacaaagcctgcgagcatccggacaaagcc
tgcaacggcgagtcctgtccgctcgcgcgcggcttttacgatcgtctcgatgcggcgcgc
tccgccgcgctggcgacgccacggctcgatcgcgcggcggtacgcgaggccgcgctcgcg
cacgaggtctgtccgtactatctggcgcaggagctcgcgcgctgggccgatgtgatcgtc
ggcgattacaactactactacgacgcgagcgcgatgctgcatgcgctcacgcaaatcaac
caatggcgcgtcggcgtgctggtcgacgaagcgcataacctgctcgaacgtgcgcggcgc
atgtataccgcgtcgctcgaccaaagtgcgttccggctcgcgcgcaagagtgcgccggcg
gcgctgaagaagccgctcgaacgcttgcagcgcgagtggaatgcggtgaaacgcgcgcag
acggccagctaccaggtgtatgcggcgatacccggcaaattgctgtccgccgcgcagaat
ctgattggcgcagtgaccgatcagctcgccgacgcgccgttgtcgatcgacgaacacgcg
ctgcgctttttcttcgacgcgatgcacttcgtcgcgctcgccgagcagttcggcgagcac
tcgatgttcgacgtgacggtgagcgccgaccgtttcgcgccgcgcgacaaaaccagtgcg
acgctatgcgtgcgcaacgtgatccccgcgccgtttctcgcgccacgctatgcggccgcg
cgtaccacggtgatgttctccggcacgctgaatccgcagcatttctatcgcgacacgctt
gggctcgccgacgacacgcaatggctcgacgtcgaaggaccgtttcgcgcggagcagttg
caggtgcacgtggccgctcatgtgtcgacgcgctggcgtgaccgcgagcgttcgctcgcg
ccgatcgtcgagctgatcgcgaagcagtacgacgcgcagcccggcaactatctcgggttc
ctgagcagtttcgactatctgcaacgcgtggtcgcgctgctgcgcgagcggcaccccggc
ttgcccgtgtgggcgcaggagcccggcatggacgaagccgcgcgcgatgcgtttctcgcg
cgcttcaggacgatgaatcaagggatcggcttcgcggtgctcggcggcgcgttttcggaa
ggtgtcgatctgaccggacagcaactgatcggcgcgttcgtcgcgacgctcggtctgccg
caggtcaacgacgtcaacgagcagatgcgccgcgcgctcgatgcgcgcttcggcaacggc
tatgactacatgtacctgtatccgggattgcagaaggtcgtgcaggcggcgggtcgcgtg
atccgcaccgaagacgatcgcggcgtcgtgcatctgatcgacgaccgctttcgccggccc
gaagtgcggcgtctgttgccgcgctggtggcaggttcgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system