KEGG   Bradyrhizobium guangdongense: X265_12015
Entry
X265_12015        CDS       T05902                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgq  Bradyrhizobium guangdongense
Pathway
bgq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    X265_12015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgq03400]
    X265_12015
Enzymes [BR:bgq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     X265_12015
DNA repair and recombination proteins [BR:bgq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     X265_12015
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme GPAT_C
Other DBs
NCBI-ProteinID: QAU38322
UniProt: A0A410V3T1
Position
complement(2500993..2501916)
AA seq 307 aa
MASRRQRRPAEIGVKAPFPGFITPALASSVERVPSGERWIHEIKFDGYRVQVHLANEAVK
VFTRRGHDWTKRFKKAADDAWRIKAGSAIIDGEIVVPAADGTTDFSVLQNELKGKSSKIV
LVAFDLLYLNGRDLRREPLGQRKAALKKIIVDTDVQFSESFEIEGRDMFAHACKVGLEGV
VSKVRDSTYASGRGNNWVKTTCTQRETLTIAGFALDEGKWDGIYLGRHRGDALIYAGKVD
HGFDKTSAAELQKRLQPLIRKTQPYAKRIAHKGIWVEPKLLAEIEYRAKSAEGKVRHPFF
KGVREDL
NT seq 924 nt   +upstreamnt  +downstreamnt
gtggcatcgcgccgtcagcgtcggccggctgagatcggcgtcaaggcgcccttccccggc
tttatcacaccggcattggcctcctcggtcgagagggtgccgtcgggggagcgatggatt
cacgagatcaaattcgatggctaccgcgtccaggtccatctcgccaacgaagctgtcaag
gtcttcacccgccgcggtcatgactggaccaagcgtttcaagaaggccgccgacgacgct
tggcgcattaaggcgggctccgcgatcatcgacggcgagatcgtcgtcccggccgccgac
ggcaccaccgatttttccgtcctgcaaaacgagttaaaaggcaaatccagcaagatcgtg
ctcgtcgccttcgatctgctctatctcaacggacgcgacctccgccgcgagccactcggc
cagcggaaggccgcgctcaagaagatcattgtggacaccgacgtgcaattcagcgagagc
ttcgagatcgaaggtcgcgacatgttcgcccatgcctgcaaagttggcctggagggggtg
gtttcgaaggttcgtgacagcacctatgccagcggtcgcggcaataattgggtcaagaca
acatgtacccaacgagagacgttgaccatcgccggcttcgcgctcgacgaaggcaaatgg
gacggcatctatctcggccgccacaggggagacgccctgatctatgccggcaaggtcgac
cacggcttcgacaagacctcagccgccgagctacagaaacgcttgcagccactcatccgc
aaaacacaaccctatgccaagcgcattgcgcacaagggcatttgggttgagccgaagctg
ctcgcggagatcgagtatcgcgccaagtcggccgaaggaaaggttcggcatcccttcttc
aaaggcgtaagggaggacttgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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