KEGG T06090: DXK01

Bacteroides intestinalis: DXK01_011980

Entry

DXK01_011980      CDS       T06090

Name

(GenBank) RNA pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

bis Bacteroides intestinalis

Brite

KEGG Orthology (KO) [BR:bis00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:bis03009]
    DXK01_011980
   03016 Transfer RNA biogenesis [BR:bis03016]
    DXK01_011980
Enzymes [BR:bis01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     DXK01_011980
    5.4.99.29  23S rRNA pseudouridine746 synthase
     DXK01_011980
Ribosome biogenesis [BR:bis03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    DXK01_011980
Transfer RNA biogenesis [BR:bis03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    DXK01_011980

SSDB

Motif

Pfam:

PseudoU_synth_2 UPF0242

Other DBs

NCBI-ProteinID:

QDO69595

Position

complement(3263888..3265513)

AA seq 541 aa
MLHRFKTSIANIPLPERFTYPFCYTPHPLCVMAAEEVQHYLNRQHEWKEELSWGKMFGVL
VVQTGNGEIGYLAAFSGILAGKNQHSYFVPPVYDLLQPQGFFKVEEENISAINRRIKHLE
EDKEYTSLLSELTRTHQQAREALDIAKQQLKEAKEKRELRRKEAGLTTEEEAGLIRESQF
QKAEYKRLERSWKEKIAALQVEINNREELIQELKVERKSRSAALQQQLFGQFRMLNYRKE
VKTLCDIFSQTVHKTPPAGAGECAAPKLLQQAYLHGWKPIAMAEFWWGNSPKAEIRHHGY
YYPACKGKCEPILQHMLQGLEVEENPMLQLPEQGYGKLKIVYEDKWLLVVNKPSGMLSVP
GKGEKESVYSLARQLYPEADGPMIVHRLDMATSGLLIVAKNKKVHQHLQAQFKNHSIRKK
YIALLDGIIPQDEGTIELPICPDPLDRPRQVVDMEYGKPAITYYQVLERRDKCTRIAFHP
HTGRTHQLRVHAAHPSGLHCPIIGDELYGRKDKRLYLHAESIEFTHPADGRIIRITEKAD
F

NT seq 1626 nt +upstreamnt +downstreamnt
atgttgcaccgtttcaagacttccatagcaaatattccacttccggaaaggtttacttat
cctttctgctacactccccatccattatgcgtgatggcggcggaagaggtgcaacactat
ctcaaccggcaacatgaatggaaagaagaactaagttgggggaagatgttcggagtactg
gtggtgcagaccggaaatggggagattggttacctggccgcgttttcgggcatattggcg
gggaagaaccaacactcctacttcgttccgcccgtatatgacttgttgcaaccgcaaggt
ttctttaaagtcgaagaggaaaatatctccgccatcaaccggcgcatcaagcatttggaa
gaggacaaggaatacacttctttattgtccgagctcacccggacccaccaacaagcccgg
gaagcactggacatagccaaacaacaattaaaagaagcgaaagagaaaagagaattgcgt
agaaaggaagccggactcactaccgaagaagaagctggtctgatacgcgaaagccaattt
caaaaagcggaatacaaacggctggaacgttcctggaaagaaaagatagccgctttgcaa
gtggaaatcaataaccgggaagaactaattcaagagttgaaggtggaacgcaaaagccgt
tccgccgccctgcaacaacaattattcgggcaattcagaatgttgaactaccggaaggag
gtgaaaaccttgtgtgatatattcagccaaaccgtgcacaaaactcctcccgccggtgcc
ggagaatgtgccgcccctaaattattgcaacaagcctatctgcatggctggaaacccatt
gctatggcagagttctggtggggcaactctcccaaagccgaaatccgccatcatggttat
tattatcccgcttgtaaaggtaagtgcgagcctatcttgcaacacatgcttcaagggttg
gaagtagaagaaaatcctatgctacaacttccggaacagggctacgggaaattaaaaata
gtctatgaggacaaatggttattggtagtcaacaagccttccggaatgctctccgtgccc
ggtaagggtgaaaaggagtccgtatatagtctggcaaggcaactctatccggaagccgac
gggccgatgattgtgcaccggctggacatggctacatcgggacttttaatcgttgccaag
aataaaaaggtgcatcaacacctgcaagcccagttcaagaatcatagcatccgaaagaaa
tatatagccctgctcgacggcatcattccccaagatgagggaaccatcgagcttcccatc
tgtccggatccgctggaccgcccccggcaggtggtggacatggagtacggcaaacccgcc
atcacttattatcaggttcttgaacggagggacaaatgcacacgcatagcttttcatccg
catacagggcgcactcatcagctccgtgtacatgccgcacatccgtcaggtctgcattgt
cccatcataggcgacgagctttacgggagaaaggataaacgcctctacttgcatgccgag
tccatcgaatttacccatcccgccgacggacggatcatccgtatcacggaaaaggctgac
ttctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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