KEGG   Bordetella pertussis CS: BPTD_1215
Entry
BPTD_1215         CDS       T01846                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
bpc  Bordetella pertussis CS
Brite
KEGG Orthology (KO) [BR:bpc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpc03021]
    BPTD_1215
Transcription machinery [BR:bpc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BPTD_1215
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 HTH_23 HTH_30 HTH_10 GerE HTH_AsnC-type Sigma70_ECF HTH_29 HTH_11 HTH_Crp_2 Peptidase_M78 HTH_3 HTH_DeoR HTH_17 HTH_28 UPF0122
Other DBs
NCBI-ProteinID: AEE66617
Position
complement(1312323..1312901)
AA seq 192 aa
MDTASAADEALMLAYGAEGDMDAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRV
IDARARYRPQARFTTWLLQIAHNLLVDAHRRQPAPVAPEQAEAALASVPAAEHEQPEARL
SEFQQRRRLQLAIERLPDEQRLAMLLRLEHDLDVEEIAQVTGVSRETVKSRLRYATRRIR
EELSSESAPRSP
NT seq 579 nt   +upstreamnt  +downstreamnt
atggacaccgcgagcgccgccgacgaagccttgatgctggcctacggggccgaaggcgac
atggacgccttcgacgccctgtacgcccgccaccgcgccggcctgtaccgctacatcctg
cgcagtgcgcgcaacgccgcccaggccgacgacatcttccaggaaacctggagccgcgtc
atcgacgcccgggcccgctaccgcccccaggcgcgctttaccacctggctgctgcagatc
gcgcacaacctgctggtcgatgcccatcgccgccagcccgccccggtcgccccggaacag
gccgaggccgcgctggccagcgtgcccgccgccgaacacgagcagcccgaggcgcggcta
tccgagttccagcagcgccgccggctgcaactggccatcgagcgcctgccggatgaacaa
agactggcaatgctgctgcgactggagcacgatctggatgtggaagaaattgcgcaagtc
accggtgtctctcgcgaaaccgtcaaatcgcgcctgcgctacgccacccggcgcatccgc
gaggagctgagctccgagagcgcccccaggagcccctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (24)   

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