KEGG   Bordetella pseudohinzii: BBN53_16385
Entry
BBN53_16385       CDS       T04945                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
bpdz  Bordetella pseudohinzii
Pathway
bpdz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpdz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBN53_16385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpdz03019]
    BBN53_16385
   03016 Transfer RNA biogenesis [BR:bpdz03016]
    BBN53_16385
Enzymes [BR:bpdz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     BBN53_16385
Messenger RNA biogenesis [BR:bpdz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BBN53_16385
Transfer RNA biogenesis [BR:bpdz03016]
 Prokaryotic type
  tRNA degradation factors
   BBN53_16385
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 KhpA-B_KH DUF5813 SLS1_KH2
Other DBs
NCBI-ProteinID: ANY17311
UniProt: A0A0J6C567
Position
complement(3558912..3561071)
AA seq 719 aa
MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSV
NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYVINPTASQLKTSKMDLVVA
GTENAVLMVESEAQQLSEDIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWAPAPKNE
ALISAVTAAAQEGLNAAYQIREKQARTTKLREVYADVSAKLAEQAAAAGQEAPDGVTVDN
ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVSVL
PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPTTDHVAGVAMGLILEDGKF
AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG
KMRESLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
VIASVDEAQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAIGGIEQQQQPAAEAAAQSEPQAE
NT seq 2160 nt   +upstreamnt  +downstreamnt
atgttcaataaagtgaccaagaccttccaatacggccagcacacggtcgtactggaaacc
ggcgagatcgctcgccaggcctccggcgctgtgcttgtgtccgttgaggacaccgtcgtg
ctggccacggtcgtcgccgccaagaaggccaagcccggccaggacttctttccgctgacc
gtcgactacatcgaaaagacctatgcggccggccgcattcccggcggcttcttcaagcgc
gaaggcaaaccctccgaaaaggaaacgctgacctcccgcctgatcgaccgcccgctgcgc
ccgctgttcccggaaggcttctacaacgaagtccaagtggtcatccacacgctgtcggtc
aatccggaaatcgatcccgatatcccggccatgatcggcgcctcggccgccctggccatc
tcgggcatcccgttcaatggccccatcggcgcggcccgcgtgggctatatcgacggccag
tacgtcatcaatcccaccgcttcgcagctcaagacctccaagatggacctggtggtcgcc
ggtacggaaaacgccgtgctcatggtggaatccgaagcccagcagctgtccgaagacatc
atgctcggcggcgtggtgttcggccatgaacagatgcaggccgccatcaacgccatccat
gacctggtgcgcgacgccggcaagcccgagtggacctgggcgcccgcgcccaagaacgaa
gccctgatcagcgcggtgaccgccgctgcccaggaaggcctgaacgccgcctaccagatc
cgcgaaaagcaggcccgcacgaccaagctgcgcgaagtctacgccgacgtgtcggccaag
ctggccgagcaggccgccgcggccggccaggaagcgcccgatggcgtgaccgtggacaac
atcctgttcgacctggaagcccgcctggtgcgcagccagatcctgaacggcgagccccgt
atcgacggccgcgacacccgcaccgtgcgtccgatcagcatccgcctgggcgtgctgccg
cgcgcccacggcagcgccctgttcacccgtggtgaaacgcaggcgctggtggtggccacg
ctgggcaccaagcaggacgagcagatcatcgacgccctgatgggcgagtaccgcgaccgc
ttcatgctgcactacaacatgcctcccttcgccactggcgaaacgggccgcatcggtgtg
cccaagcggcgtgaaatcggccacggccgcctggccaagcgttcgctggtgtcggtgctg
cccaagcccgaggacttccagtacaccatccgcatcgtctcggaaatcaccgagtccaac
ggctcgtcgtccatggcttcggtctgcggcggttcgctggccatgatggacgccggtgtc
ccgaccacggatcacgtcgctggcgtggccatgggcctgatcctggaagacggcaagttc
gccgtgctgaccgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtt
gcgggtaccgagaacggcatcaccgcgctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggtggcgctggcccaggcccgcgaaggccgcctgcacatcctcggc
aagatgcgcgagtccctggatggttcgcgcaccgagctgtcggccttcgcgccgcgcatg
ctgaccatcaagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccacc
atccgcgcgctgaccgaagagaccggcacgcagatcgacatctccgatgacggcaccatc
gtgatcgccagcgtggacgaggcccaggccaaggaagcgcagcgccgcatcgtcgaactg
accgccgatgtcgaagtcggccagatctacgacggttccgtgctgcgcctgctggatttc
ggcgccatcgtgcaagtgctgccgggccgcgacggcctgctgcacatctcggaaatcgcc
aactaccgcatcgccaacatcaacgatgtgctgaaggtcggccagcaggtccgcgtcaag
gtcatcgaggccgacgacaagggccgcctgcgcctgtcgatcaaggccatcggcggcatc
gagcagcagcaacagcctgccgccgaggcggcagcccagtccgagccgcaggccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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