KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110170467
Entry
110170467         CDS       T05002                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04510  Focal adhesion
bpec04512  ECM-receptor interaction
bpec04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110170467 (col6a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110170467 (col6a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110170467 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:bpec04147]
    110170467 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:bpec00536]
    110170467 (col6a1)
Exosome [BR:bpec04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   110170467 (col6a1)
Glycosaminoglycan binding proteins [BR:bpec00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110170467 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   110170467 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF1194
Other DBs
NCBI-GeneID: 110170467
NCBI-ProteinID: XP_020791782
Position
Unknown
AA seq 1009 aa
METLRSLFALLCVLLAASQAQVQRSRFAECPVDLFFVLDTSESVALRQKPPEYYINQIKD
FTKLFLDELRDIRHRCDRYLTWNSGALHYSDDIELVGELMDMSTSKNQLKTKIDGINYIG
KGTYTDCAIKRGIAELLVGGSHYHENKYIVVVTDGHPLTGYKEPCGGVQEAANEARQHGV
KVFAVAISPDQEDTRLSVIATDHAYRQNFTAADDSRSTNIGTIRTIINMITNETKDVCCS
FDCNAPGGAKGPDGDVGSKGEVGRPGMPGEKGDIGDVGSIGDPGPVGYSGMKGDRGGRGE
KGERGHKGYKGDKGLRGIDGIDGRKGEPGFPGLPGCKGSPGSDGLQGEPGPKGDPGSYGQ
KGAKGDPGQDGEPGRPGNSGKLGLPGDRGPPGAVGDKGERGDDGEPGKDGTRGENGQAGE
NGEQGSRGNRGPRGQPGEPGSRGEQGREGSTGPNGDTGEPGKQGAPGYRGDEGAPGPEGP
KGPRGIKGARGERGMMGDRGEDGPPGNGTVGCPGFQGYRGVRGDAGEPGSKGTLGPKGDD
GEPGDPGPDNNEPGRPGLKGAKGHRGPEGKAGPPGPPGPPGMDECEVLDIIMKLCSCCEC
KCAPMDLAFIVDSSESIGLANFALAKDFIITVIDRLIKDQQVKFSGNDSTVSVVQYSGSR
AQEVVQLGRSTNSLTEFKQMVKDLQWLAEATYTGEALEYALQNTIKLMRKDNKVVIVLTD
GRSDTSRDQVPLNVLCGKDIRVGGVGIKDYSGRVPNREQLEDVVCQSDTKKPGFSFVREN
FAELLEDTFLQNLTSKICQDKKCPDYKCSITFNRNHDILLMMDSSASVGQKNFETSKTFV
RRLAERFIDPERKSPVVRVGVAQYSRSTKMEQSLTTNLTELSYRVEQAAFSNDGTDLLQA
LDFAISRLPDRGDTSGSKKKVVLFSDGRSQDVTAAALLDKVRKVAGANLELFVIAVGSQV
NEANLRVLVSQGQPDNTSYAQRHLFRVADYPSLLRGVFHQTVSRRVAMS
NT seq 3030 nt   +upstreamnt  +downstreamnt
atggagaccctaagaagtctctttgcacttctgtgtgtgctcctggctgcttcgcaggcg
caggtccaaagatccagatttgcggaatgccctgttgaccttttctttgtattggataca
tctgagagtgtcgccctccgacagaagccccctgaatattacataaaccagatcaaagac
ttcaccaagctgttcctagatgaactccgtgacattcgtcatcgctgtgaccgatacttg
acctggaattcaggagccctccactacagtgatgatatcgaactcgtgggagagttgatg
gacatgagcacgagcaagaatcaactgaagaccaaaattgacggcatcaactacattggc
aaaggcacttacaccgactgtgccatcaaaaggggcattgcagagctgcttgttgggggg
tcccactatcatgagaacaagtatattgtggtggtgactgatgggcatcctctgaccgga
tacaaagagccttgtggaggagtgcaggaggccgctaacgaagcccggcaacatggggtc
aaagtgtttgctgttgccatctcacctgatcaagaggacaccaggctgtcagtgatcgcc
acagatcacgcctacagacagaacttcacagcagcagacgactccaggtcgaccaacatc
gggacaattaggaccatcattaatatgattacaaacgagacaaaggatgtgtgctgctca
tttgattgcaatgcacctggaggggcgaaaggtccagatggtgatgttggctctaaggga
gaagtaggccgacctggaatgcctggagagaaaggagatattggagatgtgggcagcatt
ggagatcctggtccagttggttacagtggaatgaagggagaccgtggaggcagaggagag
aagggtgaaagaggacataaaggctacaagggagataaaggcctgagaggaatagatggc
attgatgggcgcaagggtgagcctggttttcctggtcttcctggttgtaaaggatctccg
gggtcagatggtctacaaggagagccgggaccgaagggagaccctggttcttatggacag
aaaggagcaaagggtgatcctggacaagacggtgagcctggacgccctggaaactctggt
aaactgggactaccgggagatcgtgggccacctggagccgttggggacaaaggagaacgc
ggtgacgatggtgaaccaggaaaggatggaacccgaggagagaatggacaagctggagag
aatggggagcaaggttctcgtggaaatagaggccctagaggacaaccgggggagccaggc
tcccgtggagagcaagggagggagggctcaactggccccaacggagacactggtgagcct
ggcaaacaaggtgctcctggctacagaggtgatgagggcgcccctggaccagagggaccc
aaagggccaagaggaatcaaaggagctcgtggagagagaggcatgatgggggaccggggc
gaagatggtccccctggaaatggcactgtgggatgtccaggtttccagggctatcgtggc
gtgcgtggggacgctggcgagcctggtagtaagggaaccctgggacccaaaggagacgat
ggagagcccggagatccaggccctgataacaatgaaccagggcgtcccggactcaaaggg
gccaaaggccacagaggacctgagggcaaagcgggaccacctgggcctcctggacctcca
ggaatggatgaatgtgaggttctggatatcatcatgaaactctgctcatgctgtgagtgt
aaatgtgcacccatggacttggccttcattgtggacagctcggagagtattggtctggca
aactttgctcttgctaaagactttatcattacagtcatcgacagactgattaaagaccaa
caagtcaagttttcaggtaacgactcaactgtgagtgtggttcagtacagtgggtccagg
gctcaggaggtggtccaactgggaaggagcaccaacagcctcaccgagttcaaacagatg
gtgaaggacctgcagtggctggctgaggccacatacacaggagaggcactggagtatgca
ctccaaaacaccatcaagttaatgaggaaggataacaaagtggtgatcgttctgactgat
gggcgctcagacacttccagagaccaagtgcctctgaatgtgctctgtggaaaagacata
agggttggaggggtagggattaaagattactccggccgtgtgcctaaccgggagcaactg
gaggatgtggtgtgccaaagtgacaccaagaagccaggcttttcatttgttcgtgaaaac
tttgccgaacttttggaagacactttcctgcagaacctcacatccaaaatatgtcaagat
aagaaatgtcctgactacaaatgttccatcacctttaatcgaaaccatgacatcctacta
atgatggacagctctgccagtgtggggcagaagaactttgagaccagtaaaactttcgtc
cgtcgtttggcagagcgcttcattgacccagaaaggaagagtcccgtagtccgtgtgggc
gtggcccagtacagtcgcagcaccaaaatggagcagtctctgacaaccaacctcacagag
ctgtcataccgagtggagcaggctgctttctcaaacgatggcactgatttactccaggcc
ttggattttgccatttctcgccttcccgaccgtggagacacctccggcagcaagaagaag
gtggtgctgttctccgacggcaggtcccaggatgtgactgccgccgcactcttagacaaa
gtccgtaaagtggcaggtgcaaacctggagctgtttgtgatagcggtgggcagccaggtg
aacgaggccaacctgcgcgtgctggtgagccaaggacagcctgacaacacctcctatgcc
cagcgccacctgttcagagtggcagactacccctctctgctccgcggtgttttccaccaa
accgtgtctcgcagagtagccatgtcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (65)   

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