KEGG   Paraburkholderia phymatum: Bphy_4772
Entry
Bphy_4772         CDS       T00704                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bph  Paraburkholderia phymatum
Pathway
bph03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Bphy_4772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bph03400]
    Bphy_4772
Enzymes [BR:bph01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bphy_4772
DNA repair and recombination proteins [BR:bph03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Bphy_4772
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ACC73881
UniProt: B2JRW2
Position
2:1841329..1843284
AA seq 651 aa
MGRWNSSRATRIRAPAPAAGEMPVLIEPQLATLVERHPAAGQWSYEIKFDGYRMLARVDA
GRVNLLTRNGHDWTARVPRLAEALQAIPADSAWIDGEAVVLDSSGKPDFNALQNAFDRRS
TANIVLFVFDLLWINGADIREQPLRARRELLRRLMEEVGNPLLPFSDDFAQDPASLMASA
CKMKLEGIIGKRVDAPYRSGRSTDWIKLKCNLRQEFVVGGFTRVKGAKSGVRSLLLGVHE
DDGSLRYAGHVAPHLQPARAAAFAKRAASLAQSEPSFYNAPERERDREFHWLRPEVVAEV
SFLEWTPAGEVRHPVFHALREDKPASAVTEEKIVDDPDLEHVGSTRERPGPRGTVIIGDV
RISNPQRVMDEVTGHTKLDMVRYYDEIAEWALPHLHCRPLALVRAPDGIQKELFFQKHSE
RARIPGVQELPRELHPGHPPLLVANSREALVGLAQMSVVELHSWNGVAPDLDHPDRVIFD
LDPDPSLPWTAMLEAAALVKVVLDEIGLRSFAKTSGGKGFHIVVPLTRRQGWAEVKAFSQ
AVAQHMARVVPQKFSAVLGPRNRVGKIFIDYLRNGKGASTVAPFSIRARSGMAVSMPVAW
DELADVRRGDEWTMSQAVKRQRSLRADPWEGYWRTRQGITAAMRRAVGIKR
NT seq 1956 nt   +upstreamnt  +downstreamnt
atgggacgctggaattccagccgcgcgacacgaattcgtgcaccggccccggcagccggc
gaaatgcccgtcctcatcgagccccagctcgcgacactcgtcgagcgtcatcccgcggcg
ggccagtggtcgtatgaaatcaagttcgacggctaccggatgctggcgcgtgtcgacgca
ggccgagtcaacctgttgacgcgcaacggacacgactggacagcccgcgtgccgcgtctt
gccgaagcattgcaggcgattcctgccgatagcgcgtggatcgatggggaagccgtcgtg
ctcgattcatcgggcaaaccggatttcaacgcgttgcaaaatgctttcgatcgtcgtagc
accgcgaatatcgttctgttcgtatttgacctgctgtggatcaacggcgcggacattcgg
gaacagccgctgcgggctcgccgggaattgctgcggcggctgatggaagaagtcggcaac
ccgctgctgccgttttccgacgacttcgcgcaagaccccgcgtcgctcatggcgtcggcg
tgcaagatgaagctcgaaggcatcatcggcaagcgcgtggatgcgccgtatcggtcgggc
cgctcgaccgactggatcaagctcaaatgcaaccttcgacaagagttcgtggtgggagga
ttcacacgcgtgaagggcgcgaagtcgggggttcgttcgttgctgctcggcgtgcatgaa
gatgacggctccttgcgctacgcgggccacgtcgcgccgcatctgcagcccgcgcgtgca
gcagcgttcgcgaagcgcgccgcgtcgctggcgcagtcagaaccgtctttctacaacgca
ccggaacgggagcgcgatcgcgagtttcattggctcagaccggaggtggtcgcggaagtc
tcgtttctcgaatggacgcccgcgggcgaagtgcgccatcctgtttttcatgcgctgcgc
gaagacaaacccgcgagcgccgtcaccgaagagaagatcgtcgacgaccccgacctcgag
cacgtgggatcgacccgtgagcgtccaggtccgcgaggaacggtcatcatcggcgacgtg
aggatcagcaacccgcagcgcgtgatggacgaagtgacgggccacaccaagctcgacatg
gtgcggtactacgacgagatcgccgagtgggcgttgccccatctgcattgcaggccgctc
gcgctagtgcgcgcgcccgacggcatccagaaggaactgttcttccagaagcacagcgaa
cgggcccgcattcccggcgttcaggagctgccgcgcgaacttcatcccggacatcctccg
ctgctcgttgcgaacagtcgcgaggcgctggtcggactcgcgcagatgagcgtcgttgaa
ctgcactcatggaacggcgtggcacccgacctcgatcatccggaccgggtgatcttcgac
ctcgatccagacccgtcgctgccgtggaccgcgatgctcgaagcggccgccctcgtcaaa
gtcgtgctcgatgaaatcggcctccggtcgtttgcgaagaccagcggcggcaaaggattt
cacattgtcgtgccgctgacgcgtcgtcagggctgggccgaagtcaaagcgttttcacag
gccgtcgcgcaacacatggcgcgcgttgtgccgcaaaagttttcggcagtgctcggaccg
agaaatcgggttggcaagatcttcatcgactatctgcgcaacggcaagggcgccagcaca
gtcgcgccgttctccatccgcgcacgctcgggcatggcagtgtcgatgcctgttgcgtgg
gatgaactcgccgacgtgcggcgcggcgacgagtggacgatgtcgcaagccgtcaaacgg
caacgctcgttgcgggccgacccgtgggaaggctactggcgcacacgtcagggcattacg
gccgccatgcggcgcgccgtgggcatcaagcgttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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