KEGG   Brassica rapa (field mustard): 103828268
Entry
103828268         CDS       T03449                                 
Name
(RefSeq) probable RNA-dependent RNA polymerase 5
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:brp03036]
    103828268
Enzymes [BR:brp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     103828268
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     103828268
SSDB
Motif
Pfam: RdRP
Other DBs
NCBI-GeneID: 103828268
NCBI-ProteinID: XP_009102127
UniProt: M4FD60
Position
A07:636752..641728
AA seq 955 aa
MITSQRSVIALPARLETVLEKIYSKHKCPPINDDSRQRLSSIPEDLAFDLLRKAFNSPGT
SSLDRFIASKLTSSYPPPGSSRSRVSQEEIPVDYEAPSLRRRQVNGGSSLHIPPPQLLLA
LSELEFNKAFLLLTYIPRKDLGQVEITAEEIRGWKDLSMVAFEAAVWDSLGIKFCSPTDR
RLSLECDNEKTSYYQCHVASDGSYTFKGPLIEPTGTHLHKVLGDANVLTVKFEDVPRNSS
TDRYTTYRRIAKNGIMLGLRRYQFFVFKDGGKEEKKKDFSTKGVKCYFIRTDSTSANDMG
SPYIFSGKSVYEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDMTGITFEKIDDIHC
HDQNNNDVLDKNGKPCIHSDGTGYISEDLARMCPVNILKGKCLRNDNVQTPVQDPPLLIQ
FRMFFDGYAVKGTFLLNKKLPPRTVQVRPSMIKVSKDPALSDFSTFDSLEVVTTSNPPKR
TKLSKNLVALLSYGGIPDEFFLDILLNTLEEYKTIFNNKRAALKAALNYGDMDDQNAAQM
ILVGIPLDEPHLKDHLSILSNTEKNDLRAGKLPVSESYYLMGTVDPTGELKEEEVCVILE
SGQISGNVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKYGVFFPQKGPRSLGDEIAGG
DFDGDLYFISRNPELLEHFKPSEPWVSLTPPTKGNSARKPSHLSPAELEEELFDMFLKAR
FNASNVVGMAADSWLTIMDRFLVLGDENAEEKAEMKKKMLKLIDIYYDALDAPKKGAKVF
LPDELRPDIFPHYMERDQKFKSTSILGIIYDFVKSQTAEEHKPSAEISKLACFEDEPVSD
YHKKKWGQLYEKYRKEMIQAMGNKDESANEVIQRYKQEFYDAAGFEDTKKSIEELYPQAL
ALYNVVYDHAIIMDNVRNCGFAWKVAGPILCRFYLEKKQGKSLLCSLPMLKELWG
NT seq 2868 nt   +upstreamnt  +downstreamnt
atgataacttcgcagaggtcagtgatcgctcttccggctcggctcgaaaccgttttggag
aaaatatacagcaaacacaaatgtcctcccataaacgacgactcaaggcagagactttct
tcgatccctgaggatctagctttcgatttgctcaggaaagcttttaattctccgggaacg
tccagcctcgaccgcttcatcgcctctaagcttactagctcgtatcctcctcctggttcc
tctcgaagcagagtttctcaagaagagatacctgttgattatgaagctccttctttgaga
agacgacaagtcaatggaggatcttctcttcacattcctcctcctcagctcttactagct
ttgagtgaacttgaattcaacaaggcctttctcttgcttacctacattcctcggaaagat
ctgggtcaggttgaaataactgctgaagagattagaggatggaaggatctgtctatggtt
gcatttgaagctgcggtttgggacagtttgggaattaaattttgttccccaacagaccgt
agattgtcactggaatgtgataatgagaagactagctactaccaatgtcatgttgcttcg
gatggcagttacacattcaagggccctcttattgagcccactggaacacacctgcacaag
gtcttgggtgatgctaatgtgttgactgtcaagtttgaggatgtcccgagaaactcatca
accgatcgttacactacatacagaaggattgccaagaatggtatcatgcttgggttacgt
cgttatcaattttttgttttcaaagatggtggaaaagaagaaaagaagaaagacttttct
acaaagggagtgaaatgctacttcatacgcacagactccacgtctgcgaatgatatggga
agtccctacatcttctccgggaagtcagtttatgaagctcgcatgcattttatgcatgtc
cacacattgccatctttggccaactacatggcaaggttttcattgattctttcaaagacc
aagaagcttgaagttgacatgactgggatcaccttcgagaaaatcgatgatatacactgc
catgatcaaaacaataatgatgttctggataagaatgggaaaccatgtatacattcagat
ggcactggctacatctctgaagatcttgctcggatgtgtccagtaaacatattaaaagga
aaatgtctcagaaatgataatgttcaaacccctgttcaagacccgcctcttctgatccag
tttcggatgttttttgatggctatgctgttaagggtacttttctcctaaacaaaaaactt
cctcctcggactgtccaggttcgaccttctatgatcaaggtctctaaagatccagctttg
tcagattttagcacttttgattccctagaggttgtcacaacaagtaatccacctaaaaga
acaaagttatcaaaaaacttggttgcgctgcttagctatggaggaatccctgatgaattc
tttctggatatattgctcaacaccctggaagagtacaaaaccatcttcaacaacaaacgt
gctgctcttaaagctgcccttaactatggggatatggacgatcagaacgctgcacaaatg
attttggttggtatcccacttgacgaaccacacttgaaggatcatttgtctattctttca
aacacagagaagaatgatctcagagcaggaaagcttcctgtgagtgaatcatactacctc
atgggtactgttgatcccaccggagagttgaaggaagaggaagtctgtgtcatccttgag
tctggccaaatctcagggaatgtgctagtttacaggaatcctggactacattttggggac
atacatgtacttaaggctacttatgttaaggccttggaggagtatgtaggaaactccaag
tatggtgtcttctttcctcagaaaggcccaagatctttgggagacgagattgcaggtggt
gattttgatggtgatttgtatttcatctccagaaatccagagctacttgaacacttcaaa
ccaagtgagccatgggtgagtttgactcctcctactaaaggcaactctgctagaaagcca
agccatctttcaccagcggagctggaggaagagcttttcgatatgttcttgaaggcaaga
tttaatgctagcaatgttgtagggatggctgctgatagctggttaacaataatggaccgc
ttcctcgtgctaggagatgaaaacgctgaggaaaaagctgaaatgaagaagaaaatgtta
aagttgattgatatatactatgatgctcttgatgcaccaaagaaaggtgctaaggtcttt
ctcccagacgagctgaggcctgacattttcccacactacatggagcgtgatcagaaattc
aagtccacttctattcttggaataatctatgactttgttaaatcacagacagcagaggaa
cacaaaccatcagctgagatcagtaaacttgcgtgtttcgaagatgagccagtctctgat
tatcataagaagaaatggggacagttgtatgaaaagtacagaaaggagatgatacaggcg
atgggtaacaaagatgaatcagccaatgaagttatccagagatacaagcaggagttctat
gatgctgcagggttcgaagacaccaagaaaagtatcgaagaactttatccgcaagccttg
gcactttacaacgtcgtttacgaccatgcaatcataatggataacgttcgaaactgtggg
tttgcctggaaggttgcaggaccgatcctgtgcaggttctaccttgagaaaaagcaggga
aaatccttactgtgttcactcccaatgcttaaagagctttggggttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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