KEGG   Bos taurus (cow): 504760
Entry
504760            CDS       T01008                                 
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
  KO
K12646  ATP-dependent RNA helicase DDX58 [EC:5.6.2.6]
Organism
bta  Bos taurus (cow)
Pathway
bta04064  NF-kappa B signaling pathway
bta04622  RIG-I-like receptor signaling pathway
bta04623  Cytosolic DNA-sensing pathway
bta05160  Hepatitis C
bta05161  Hepatitis B
bta05162  Measles
bta05164  Influenza A
bta05168  Herpes simplex virus 1 infection
bta05169  Epstein-Barr virus infection
bta05171  Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:bta00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04064 NF-kappa B signaling pathway
    504760 (RIGI)
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    504760 (RIGI)
   04623 Cytosolic DNA-sensing pathway
    504760 (RIGI)
 09160 Human Diseases
  09172 Infectious disease: viral
   05161 Hepatitis B
    504760 (RIGI)
   05160 Hepatitis C
    504760 (RIGI)
   05171 Coronavirus disease - COVID-19
    504760 (RIGI)
   05164 Influenza A
    504760 (RIGI)
   05162 Measles
    504760 (RIGI)
   05168 Herpes simplex virus 1 infection
    504760 (RIGI)
   05169 Epstein-Barr virus infection
    504760 (RIGI)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:bta04054]
    504760 (RIGI)
Enzymes [BR:bta01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     504760 (RIGI)
Pattern recognition receptors [BR:bta04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   504760 (RIGI)
SSDB
Motif
Pfam: CARD_2 RIG-I_C RIG-I_C-RD DEAD ResIII Helicase_C AAA_22 CCDC85 PNMA AAA_25
Other DBs
NCBI-GeneID: 504760
NCBI-ProteinID: XP_002689526
BGD-bta: BT11559
Ensembl: ENSBTAG00000003366
VGNC: 27979
Position
8:11523963..11605030
AA seq 942 aa
MTAEQRRNLHAFRDYVRKILDPTYILSYMTPWFRDDVVQHIQAKKNNKGPMEAASLFLQV
LLELQEEGWFRGFLDALQQAGYSGLYEAIESWDFQKLEKLEEYRLLLKRLQPEFKTTINP
EDILPEISGCLLNQECEEIIQISSNKGLMAGAEKMVECLLRSDKENWPKTLKLALEKEES
KFSELWMVEKGAENVQMKDLEDDEMKTLDVHIVYKEEPESQNLSQNSCSSEVPPTYSPLK
PRNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVVFAVQVPL
YEQQKSVFSEYFERFGYKVSGISGETADNISVEQIVENNDIIILTPQILVNSLKDGTIPS
LSIFTLMIFDECHNTNKHHPYNMIMFHYLDQKLGGSSDSLPQVIGLTASVGVGDAKNTAE
ATEYICKLCASLDTAVVTTVRDNLEELEEVVYKPQKFFRKVESRTTDRFKRIISQLMAET
EALAKSIFEELGTVTLENLSRIQNRNFGTQKYEQWIIAVQKACMVFQMPDKEEESRICKA
LFLYTSHLRKYNDALIINEDARMKDALNYLKNFFKNVRAAGFDAIEQDLTQRFEEKLLEL
EGISMDPSNENAKLKDLCFILQEEYHLNPETRTILFVKTRALVDALKNWIEENPKLSFLK
PGILTGRGRTNQTMGMTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVILYEY
VGNVIKMIQTRGRGRARGSKCFLLTSNADVIEKEKLNICQEKMMNESISRLQGWNEAVFK
EKIRQIQIQEKLIRDSQGKVKPVVDKKNKKLLCGKCKTFACYTADIRVVEECHFTVVRDA
FRECFVTKLHPRPKKFGSFDKKAKIFCARKDCLHDWGIHMKYKTFEIPVIKIESFVVEDV
ATGAQTLYAKWKDFNFEKIPFDAAEMSPWAQDLNLQGVDGLE
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgacggcagagcagcggcggaatttgcacgccttccgcgactatgtcaggaagatcctg
gaccctacctacatcctgagctacatgaccccctggtttagggacgatgtggtgcagcac
attcaggccaagaaaaacaacaaggggcccatggaggctgcctcccttttcctccaggtc
ctactggagctccaggaggaaggctggttccgcggctttttggatgcccttcaacaagca
ggttattctggactttatgaagccattgaaagttgggatttccaaaaacttgaaaaattg
gaggagtatagattacttttaaagcgtttacaaccagaatttaaaaccacaatcaatcca
gaagatatccttcctgaaatatctggatgtttacttaatcaagaatgtgaagaaattatt
cagataagttccaacaaggggctgatggcaggtgcagagaaaatggttgaatgccttctc
agatcagacaaggagaactggcccaaaactttgaaacttgcattggagaaagaagagagc
aagttcagcgaactgtggatggtagagaaaggtgcagaaaatgttcaaatgaaagatctt
gaggatgatgaaatgaaaactttggatgtacacattgtctacaaagaagaaccagaaagc
cagaatcttagccagaattcctgttcttcagaagtgcctcctacttatagcccattgaaa
ccaagaaattaccaactagagctggctttacctgctcagaagggaaagaatacaataata
tgtgctcctactggttgtggaaaaacctttgtttcccttcttatatgcgaacatcatctt
aagaaatttccacaaggacgaaagggaaaagttgtcgtttttgctgttcaagtcccactg
tatgaacagcagaaatctgtgttctcagaatattttgaaagatttgggtacaaagtttca
ggcatttctggagagacagctgacaatatctctgtggaacagattgttgagaacaatgac
atcatcattttaacaccacagattcttgtgaacagccttaaagatgggactattccatca
ctctccatctttactttgatgatatttgatgaatgtcacaacaccaataaacaccatcca
tataatatgatcatgtttcattatctggatcagaaactgggaggatcttcagactcattg
ccccaggtcattgggctgactgcctcagttggcgttggagatgccaaaaacacagccgaa
gccacagaatatatctgcaaactgtgtgcttctctcgacacagcagtggtaacaacagtc
agagacaacttggaggaactggaggaggttgtttacaagccccagaagtttttcaggaaa
gtggaatcacggactacagacagatttaaacgcatcatatctcagctgatggcagagaca
gaggctctagcaaagagtatctttgaagaacttgggactgtaactcttgaaaacttatct
cgaattcaaaataggaattttgggacacagaaatatgaacagtggattattgcagttcag
aaagcatgcatggtgtttcagatgccagacaaagaggaagaaagcaggatttgtaaagcc
ctgtttttgtacacgtcacatttgcggaaatacaatgatgccctcattatcaatgaggat
gcacggatgaaagatgctctgaattacttgaaaaacttcttcaaaaatgtccgggcagca
ggatttgatgcaattgagcaagatctcactcagagatttgaagaaaagctgttggaacta
gaaggtatttccatggatcccagcaatgagaacgctaaactcaaagatctctgcttcatc
ttgcaagaggaataccacttaaacccagagaccagaaccatcctctttgtgaaaacccga
gcactggtggatgccttaaagaactggattgaagaaaatcctaaactcagctttctaaaa
cctggcatattgactggacgtggcagaacaaatcagacaatgggaatgacgctcccagca
cagaagtgtgcactggatgcattccgaaccaacagagacagcaagattctaattgctacc
tcggtcgccgatgaaggcattgacattgctcagtgcaatctggtcatcctctacgagtat
gtgggcaatgtcatcaaaatgatccagaccagaggcagaggaagagcaagagggagcaag
tgcttccttctgactagtaatgctgatgtaatcgaaaaagaaaaactgaacatctgccaa
gaaaaaatgatgaatgagtccatttcaaggctgcagggatggaatgaagcagtatttaag
gaaaagattcgccagatacagattcaagaaaaattaatcagggatagtcaaggaaaagta
aaacctgttgttgataagaaaaataaaaagctgctctgtggaaagtgcaaaacctttgca
tgttacacagctgatataagagtggtggaggaatgccatttcactgtggttagagatgct
ttcagggagtgcttcgtgactaagttacaccccagaccgaagaagtttgggagttttgac
aagaaagctaagatcttctgtgccaggaaggattgcctccatgactggggaattcacatg
aagtacaagacattcgagattccagttataaagatcgaaagttttgtggtggaagatgtt
gcgactggagctcagacactgtatgcaaagtggaaggactttaattttgagaagatccca
tttgatgctgcagaaatgtccccttgggctcaggacctcaatctgcagggagtggatggc
cttgaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (10)   
   KEGG PATHWAY (10)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   BGD-BTA (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (16)   
   RefSeq(nuc) (2)   
   GenBank (7)   
   EMBL (7)   
Protein domain (10)   
   Pfam (10)   
All databases (65)   

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