KEGG   Bartonella vinsonii subsp. berkhoffii: BVwin_01900
Entry
BVwin_01900       CDS       T02470                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
bvn  Bartonella vinsonii subsp. berkhoffii
Pathway
bvn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bvn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BVwin_01900 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bvn03019]
    BVwin_01900 (pnp)
   03016 Transfer RNA biogenesis [BR:bvn03016]
    BVwin_01900 (pnp)
Enzymes [BR:bvn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     BVwin_01900 (pnp)
Messenger RNA biogenesis [BR:bvn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BVwin_01900 (pnp)
Transfer RNA biogenesis [BR:bvn03016]
 Prokaryotic type
  tRNA degradation factors
   BVwin_01900 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 DUF1108
Other DBs
NCBI-ProteinID: AGF75342
Position
complement(263160..265295)
AA seq 711 aa
MFKTHKIEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT
VNYQEKSYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH
DLENNPDILAMIASSAALTLSGIPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA
GTESAVLMVESEAHELPEDIMLGAVMFGHKSLQPVLDAIIKLAEVAAKDPRDFVPEDLSD
LEKAMRKMAEQDIRKAYTITDKQERYAAIDAIKTEITNKFMPETDEECKFSTDQLATVFK
QLQAKIVRWNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT
GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTK
ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL
SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMEIALEQAKEGRIHILNEMA
KALTSARAELSEFSPRIEVMNIPVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA
SADAKTIEAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASER
VIKTTDIVKEGDKVWGKLMGFDERGKVRLSMKIIDQKTGKEITSDKPVKEG
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgttcaaaacgcacaagatagaaattgaatgggctgggcggccactcaccatcgaaaca
ggaaaaatagcccgtcaagctgatggtgcagtgattgctacctacggagaaactattgtc
ttagcaaccgttgtatcagcaaaaagtccaaagccagatcaagacttttttccacttacc
gttaattatcaagaaaaatcttatgctgttggtagaataccgggcggttatttgaaacgg
gaaagcagaccaactgaaaatgaaactttgatttcacgtttgattgatcgtccgattcgc
cccctcttcgccgatggatataaaaatgatacacaagtcattgtttccgttatacagcac
gatcttgagaataatcccgatatccttgcaatgattgcctcttctgccgcattgacttta
tcaggtattcctttcatggggcccattgctggtgcccgcgtcggatattgtaacggacaa
tatgttctcaatcctcatatcgatgaaatgccggaatcaaaacttgatcttgttgtagca
ggaactgaaagcgctgtgttgatggttgaatcagaagcacacgaattgccggaagacatc
atgttgggtgccgttatgtttgggcacaaaagtcttcaacctgttcttgatgctatcatc
aaacttgccgaagttgctgcaaaagacccacgcgattttgttcccgaagatctttctgat
cttgaaaaagccatgcggaaaatggctgaacaagatatacgtaaagcctacactattaca
gataaacaagaacgttatgctgcaattgatgccataaaaacggaaatcactaataaattt
atgccagaaacagacgaggaatgtaaatttagtacagatcagcttgcaaccgttttcaaa
cagttgcaagcaaaaattgttcgctggaacattcttgatactcaaaagcgtattgatggg
cgaaacctttcaacagtacgccccattcaatcagaagtgagtattttaccccgtacacat
ggatccgcactctttacgcgtggagaaacacaagcaattgtcgttgcaacactcggaact
ggtgaagatgaacaatatgttgactccttaacaggtatgtataaggaaacattccttctt
cattataatttcccgccattttcagtaggtgaaacaggacggcttggctctcctggtcgc
cgtgaaattggacatggtaaattggcgtggcgtgctcttcatcctatgttaccaaccaag
gaatccttcccctataccattcgtgctgtctcagaaattactgaatccaatggatcatct
tccatggcaactgtttgcggaacttcacttgctctcatggatgctggtgttcctctggca
cgcccagttgcgggtattgctatgggcttgattaaagaaggtgaacgctttgctgttctg
tccgatattttaggagatgaagaccatcttggagatatggattttaaagtagcaggaaca
gaaaatggtattactgctttacaaatggatatcaagattgatggtattaccgaagaaatt
atggaaatcgcacttgaacaagctaaggagggtcgaatccatatccttaacgaaatggct
aaagctttaaccagtgcacgtgctgaactcagcgaattttctccacgcatcgaagttatg
aacattcctgttgataaaattcgcgatgtcataggctctggcggtaaagttattcgagaa
atcgttgaacaaactggagcaaaaatcaatattgaagatgatggaacaattaaaattgct
tctgccgatgctaaaaccattgaagcagcaaaacgctggattcattccattgttgatgaa
cctgaagttggtgctatctaccaaggaacagttgtgaaaactgcagaattcggtgcattt
gtaaatttctttggctcacgtgatggactcgttcacatctctcaactcgcatcagaacgc
gtcataaaaacaacagacattgttaaagagggtgataaagtttggggtaaattaatggga
tttgatgaacgtggtaaagttcggttatcaatgaaaatcatcgatcaaaaaaccggtaaa
gaaattacaagtgataagccagtaaaagaagggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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