KEGG   Capsicum annuum (peppers): 107843117
Entry
107843117         CDS       T04646                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107843117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cann03041]
    107843117
Enzymes [BR:cann01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107843117
Spliceosome [BR:cann03041]
 Complex C
  Other components
   Step II factors
    107843117
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 nSTAND3 AAA_19 Myosin_head GAP1-M T2SSE NACHT ABC_tran
Other DBs
NCBI-GeneID: 107843117
NCBI-ProteinID: XP_016542781
Position
9:complement(4733419..4746860)
AA seq 711 aa
MPSMAAYNFSRNTQQHQSKGDFFARKQKIEQQRKNLPIAEVERRLMEEVRNNDTLIIVGE
TGSGKTTQLPQYLFKWGFCHDGGIIGITQPRRVAAITVAKRVAEESGVPLGQRVGYAIRF
EDVTSVQTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQKAR
SKSINGVVNTDHNNSNAGHDLEERIGNQNDGILKPCQAKKYNLLKLIIMSASLDARVFSE
YFGGARAVHVQGRQFPVDIFYTHKPETDCIDAALITIFQIHLEEGPGDILVFLTGQEEIE
SVERLIHERLRQLPESSRKLLTFPIFSSLPSEKQMKVFMPSPPGYRKVILATNIAETSVT
IPGIRYVVDPGLVKARTYDPKMGVDSLIIVTTSKAQALQRSGRAGRDGPGKCYRLYQESF
FEKLTDSTLPEIKRCDLSNVVLQLKALGIDDVVNFDFIEKPDRTAVVNSLWSLYLLGAVT
EENKLSDVGHQMARLPLDPVYSKALIVASQFGCLKEMLICVAMLSVESIFYAPREKLEES
RNALKSFASPEGDHLTLLNVYRAADEFFQKNKMVNSEERAEKNLRKWCKDNYINSRSLKH
ARDIHSQILRNVEQMGLRVTSCEDDMLLLRRCLAASFFLKVAMKQPDGAYRVTLSGLMVQ
IHPSSVLFRAKPECIVFNELVRTNHSYVRNVSRIDYLWLIELAPHLYAVQD
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgccttcaatggctgcttacaatttttcaagaaacactcaacaacatcaatctaaaggg
gacttttttgccaggaagcaaaagattgagcaacagaggaaaaatttaccaattgctgaa
gtcgaaaggaggctcatggaagaggtgcggaacaatgatactctgataattgttggagaa
actggaagtggaaagacaactcaactacctcagtatctttttaaatggggattttgccat
gatggtggtatcattgggataactcaacctagacgtgtggctgctatcactgttgctaaa
cgcgttgctgaggaaagtggagttccattaggtcaaagggttggatatgctattagattt
gaagatgtaacttctgtccaaacaaagatcaaatatatgacagatggtttgcttctgagg
gaagcattattggatccatacctctccaagtattctgttattattgttgatgaggcgcac
gagcgaactatccacactgatgtattgcttggattgttaaagaatgtacagaaagcaagg
tcaaaatcgataaacggagtggtaaatactgatcataataattctaatgccgggcatgac
ttggaggaaaggattggcaatcagaatgacggtattttgaagccatgtcaagcgaaaaag
tacaacctgttgaaattgatcatcatgtcagccagtttggatgcacgagttttctcagag
tactttggtggtgcaagagctgttcatgttcagggacggcagtttcctgtcgatatattc
tacactcataagcctgagacagattgcatagatgcggctttgattactatatttcagata
catctagaggagggtcctggtgatatacttgtattccttactggtcaagaagagattgaa
tccgttgagaggcttatccatgaacgcctccgacaattacctgaaagcagtaggaagctc
ttaacttttcccatattctcatcacttccctctgagaagcaaatgaaggttttcatgcct
tcaccaccgggatatcgtaaggtgattttggcaacaaatattgctgagacatctgtgaca
atacctggaattaggtacgtagttgatcctggactggtgaaagcacgaacatatgatcct
aagatgggagttgattcattgatcattgtcacaacatctaaagcgcaagctctgcaaagg
agtgggcgtgcaggacgtgatggacctgggaaatgctatcgtttgtatcaagaaagtttc
tttgagaaacttacagattctacgttacctgagattaagagatgtgacctctcgaatgtt
gtattgcagctcaaggctctaggcattgatgatgtcgttaactttgacttcattgaaaaa
ccagacaggactgctgtagtcaactcattgtggtctctctacttattgggcgctgtaaca
gaagagaataaactttcagatgttggacatcaaatggccaggctgccccttgatccagtc
tattctaaggctctaattgttgctagccagttcggctgcttgaaagaaatgttgatctgt
gttgcaatgctttcagtggaatctattttctatgcaccacgtgaaaagttggaagagtca
cggaatgcgttgaaaagttttgcaagtccagagggggatcatttgacgttgcttaacgta
taccgcgctgctgatgagttctttcagaagaacaagatggtaaatagcgaggaaagagct
gaaaagaatcttagaaaatggtgcaaggataattatattaacagtcgctctctaaaacat
gctcgtgatatccacagtcaaattctgagaaatgttgaacaaatgggactccgcgtcact
tcttgtgaagatgatatgcttctccttcgcagatgccttgccgcctcgtttttccttaaa
gtagctatgaagcagcctgatggtgcatacagggtcacgttaagtggtttgatggtccaa
atacacccgtcttctgtcttgttccgagccaagccagagtgtatagttttcaatgaactc
gtccgtactaatcatagttatgtccgtaatgtttctagaatcgattacttgtggctcatc
gagctggctcctcacttgtacgcggtgcaagactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (30)   

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