KEGG   Cognaticolwellia beringensis: B5D82_08540
Entry
B5D82_08540       CDS       T05628                                 
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
cber  Cognaticolwellia beringensis
Pathway
cber03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cber00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B5D82_08540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cber03019]
    B5D82_08540
Enzymes [BR:cber01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     B5D82_08540
Messenger RNA biogenesis [BR:cber03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B5D82_08540
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C AAA_22 SNF2-rel_dom SecA_DEAD
Other DBs
NCBI-ProteinID: ASP47796
UniProt: A0A222G7B6
Position
complement(2022782..2024047)
AA seq 421 aa
MKKTHLTEIKFSELKLEPTVVSGLETMGFEYCTEIQAKSLPILMTGKDIAGQAQTGEGKT
IAFLAATFHHLLQKKDVSHNQPRALIMAPTRELAIQIHRDAIEMAKSTGLRLGCVYGGEG
YESQRLELEQGVDILIGTCGRLLDYLKQGIYNLSNIEVVVLDEADRMFDLGFIKDIRYMF
GKMPAATERLSMLFSATLSFRVKELAFEHMNDPDSVEVEPDQKTNIRISEELFYPSNEDK
MSLLQTLIEEDWPDKAIIFANTKHVCEKIHAHLEADNIRVGMLTGDVIQKKRLKILEQFT
DGQLDVLVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGATGHAISLACEQ
YVFNLPAIESYIEHDLPVSKYDHEALLTDLPKPKPRPRRHKPHNGGQNRSRNTSNRPQRN
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaaaaaaacacacttaacagaaataaagttctctgaacttaaactcgagcctaccgta
gttagcggcctcgaaactatgggctttgaatattgtactgaaattcaagcaaagtctctt
cctatactcatgacaggcaaagatattgccggtcaagcacaaaccggtgaaggtaaaacc
attgcctttttagccgcaacctttcatcatttattacagaaaaaagatgttagccacaac
caaccgcgtgccttaattatggcaccaacgcgtgagcttgctatccaaattcatcgcgat
gccattgaaatggcaaaaagtaccggcttacgtcttggatgtgtttatggtggtgaaggt
tacgaaagccaacgtttagaacttgaacaaggtgtagatattttaatcggcacttgtggt
cgcttactcgattacttaaaacaaggtatttataacctcagtaatattgaagttgtggta
cttgatgaagctgaccgtatgttcgatttaggctttataaaagacattcgttatatgttt
ggcaaaatgcccgcagcaactgaacgtttaagcatgctattttctgccacgttatcattt
cgtgttaaagaattagcttttgaacacatgaacgaccctgacagtgttgaagtagaacct
gaccagaaaactaacattcgtatatctgaagaattattttatccttctaacgaagataaa
atgtctttattacaaacgctaattgaagaagactggccagataaagccattatttttgcc
aatactaaacatgtttgtgaaaaaatacatgctcaccttgaagctgataatattcgcgtt
ggcatgcttactggcgatgttattcaaaagaaacgtttgaaaattttagagcaatttacc
gatggccaattagatgttctagtggctactgatgttgcagctcgtggtttacatattcca
gcagtaactcatgtttttaactatgacttacctgatgactgtgaagattatgttcatcgt
attggtcgtacaggccgagctggtgctactggccatgctattagcctagcgtgtgagcaa
tatgtttttaacttacccgcaattgaaagctacatcgaacatgatttgcccgtgagtaaa
tatgaccatgaagcactcttgaccgacttgcctaagccgaagccacgtccacgtcgtcat
aagcctcataatggtggccaaaatcgtagccgtaataccagcaataggcctcaaaggaac
agttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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