KEGG   Clostridium botulinum A3 Loch Maree: CLK_2687
Entry
CLK_2687          CDS       T00670                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cbl  Clostridium botulinum A3 Loch Maree
Pathway
cbl03030  DNA replication
cbl03410  Base excision repair
cbl03420  Nucleotide excision repair
cbl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cbl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CLK_2687 (ligA)
   03410 Base excision repair
    CLK_2687 (ligA)
   03420 Nucleotide excision repair
    CLK_2687 (ligA)
   03430 Mismatch repair
    CLK_2687 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbl03032]
    CLK_2687 (ligA)
   03400 DNA repair and recombination proteins [BR:cbl03400]
    CLK_2687 (ligA)
Enzymes [BR:cbl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CLK_2687 (ligA)
DNA replication proteins [BR:cbl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CLK_2687 (ligA)
DNA repair and recombination proteins [BR:cbl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CLK_2687 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CLK_2687 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CLK_2687 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CLK_2687 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 HHH PTCB-BRCT DNA_pol_lambd_f 5_3_exonuc RNA_ligase DNA_ligase_ZBD BRCT_2 HHH_3 ILEI PADR1_Zn_ribbon
Other DBs
NCBI-ProteinID: ACA56923
UniProt: B1L1H3
Position
complement(3551980..3553974)
AA seq 664 aa
MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKKTEVTLPYSPTQR
VGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVT
KKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNHIIEVHGEAI
MTKTAFEEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGSEFKNYR
EMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIKTREIL
GYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGGVTVKRATLNN
MDDIKRKNVKLGAKVLVRRSNDVIPEIMGVAEESLEESKEIQAPDRCPYCNSHLVQNGVH
YYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKTAEQLFEKLDIKSIADLYKIKKEELL
TLEKFKDKKSQNLINAIQNSKNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIKNTTI
EQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVT
GSLNNYSRGEIKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFS
NKIK
NT seq 1995 nt   +upstreamnt  +downstreamnt
atggataacaagttagaaaaaatgaaggaacttgtagaagaattaaatcagtatgcctat
gagtattatgtattagataatcctagtatatctgataaagaatatgatttgaaatatgat
gaattagtaattttggagaagaaaactgaagttacattaccttattcaccaacccaaagg
gttggtgataaaatattaggtgaatttagtaaatatactcacaaaggaagactttggagt
ttggataaagcccaaaatatggagcaattaatagagtggcataatagaaatttaaaagtt
atagagcaatataattctatgagtgaagataaattaccagagttgagatatatagttact
aaaaaatttgatggattaacggtaaattgtacctatgatgaaaatggaattttaataaaa
agtgctacaagggggacgggaattataggtgaagatataacagctcaaataaaaactata
aagacagttccattaaaaataaaaaataaccacattatagaagtgcatggagaagccata
atgactaaaacagcttttgaagaatataataaagctgctcaagttccactaaagaattta
agaaatggagcagcaggggctcttagaaatttagatattaaagaaactgctagaaggaat
ttatccgcatttttttatgatgtaggttataatgaaggttcggaatttaaaaattataga
gaaatgatgaattttataagaaatatgggattgcctcaggataagtatattaaagaatgt
actaacatggaggaagtggaaaaagaaattgaatatatagaatccataagagaagaactg
gattatgatatagatggggcagtaattgttgtagatgatattaaaacaagagagatatta
ggatatactataaaattccccaaatgggctatagcttataaatttgaagctaaggaaatt
actacaaggcttctagatgtagaatggaatgtaggaagaagcggaagagttactccaaca
gctttattagaacccgtagaactaggtggagtcacagtaaaaagagctacactaaataat
atggatgatattaagagaaaaaatgtaaaattgggtgctaaggttttagttagaagatct
aatgatgttataccggagataatgggagtagcagaagaatctttagaggaaagtaaggaa
atacaggcaccagatagatgtccttattgtaatagccatctagtacaaaatggagtacat
tattattgtgagaatacattatcttgtaaaccacagatggtaaaaagtatagtgcatttt
gctagtagagaagctatgaatatagcaggattcagtgaaaaaactgcagaacaacttttt
gaaaaattagatataaaatctatagcagatttgtataagataaaaaaagaagaactatta
actttagaaaaatttaaggataaaaagtctcaaaatcttataaatgctatacaaaatagc
aaaaattgtgatttggcatcctttatatacgctttaggtatacctaatgtaggtaaaaag
actgcaaatgatttagtaatgaaatttaaaactttagaatctataaagaatacaacaata
gaacaattagtagaagttccagatgtgggagaaatagtagctaagagcatatatgatttt
tttgaagacgaaaaaattataagtaacatagaagaattattaaatttgggtgtaaaacct
tattatgaagaagaaagaattgatgaaaatccttttatggataaaactatagttgtaaca
ggaagtttgaataattatagtagaggggaaataaaagataaattacagtctttaggagct
aaagtttctagtagtgtaagtaaaaatacagactatgtcttagtgggggaaaaaccagga
tctaaatatgaaaaagcaattgaattaggagtaaaagtaatcaacgaagaagaattttct
aataaaattaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (15)   
   Pfam (15)   
All databases (36)   

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