KEGG   Clostridium botulinum F 230613: CBF_3553
Entry
CBF_3553          CDS       T01865                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
cbm  Clostridium botulinum F 230613
Pathway
cbm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBF_3553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbm03400]
    CBF_3553
DNA repair and recombination proteins [BR:cbm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CBF_3553
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CBF_3553
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N RsgA_GTPase AAA_29 AAA_16 nSTAND1 nSTAND3 AAA_22 NMDAR2_C AAA_18 AAA_21 APS_kinase DnaJ_CXXCXGXG ATPase NACHT cobW Viral_helicase1 Zn_Tnp_IS91 YhfH
Other DBs
NCBI-ProteinID: ADG01100
Position
complement(3727085..3729907)
AA seq 940 aa
MKDKIIIKGAKVNNLKNINLQLPRDKYIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLGQMDKPEVDYIEGLSPAISIDQKTTNRNPRSTVGTVTEIYDYLRLLYAKIGKPH
CPKCGKEITQQTVDQMVDKIMTMEERTKIQVLSPIINGRKGEHIKTIENIIKSGYVRARI
DGNIVDLEEEEIKLEKNKKHTIEAVVDRLVVKEGIESRLADSMETALKLSEGIVIINVVG
QEDMLFSEKFACVDCNISIGEIAPRMFSFNSPYGKCDKCDGLGTLMEIDEDLVIPNKSKS
IVEGAIIPLGSGSLKEDSWTFSILKALSKEYKFDLNTPIEKLDPKIVKIILYGLDGKRIK
VNYKKENRIMELNHAYEGVINNLRRRYIETNSDYIKRDIERYMSDNPCPKCKGARLHDEA
LSVTVADKNIFEFCNMSIKKELDFIESLELSKKEEIISNQILKEIRSRLKFLIDVGLDYL
TLSRNASTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIKTLKNLRDLG
NTLVVVEHDEDTIREADYIVDIGPGAGEHGGEVVAAGTLEDIMNTEKSITGQYIKGVRTI
SVPKERRKCEGNYISIKGARENNLKNVSAKFPIGLFTCVTGVSGSGKSTLVNEILYKGIH
KKLNNSKDNPGKHKEITGIENVDKVINIDQSPIGRTPRSNPATYTGVFDIIREVFSNTQE
AKMRGYKPGRFSFNVKGGRCEACTGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKY
KGKNISDVLNMTVEEALDFFQNIPRIKSKLQTLMDVGLSYIRLGQSSTQLSGGEAQRIKL
AYELSKRSTGKTLYILDEPTTGLHMEDVNKLISILQRLTNSGNTVVVIEHNLDVIKNADY
LIDLGPEGGEKGGTIIAEGTPEKISRASNSYTGQYLKKML
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgaaggataaaattattattaaaggcgctaaggttaataatttaaaaaatataaatctt
cagttgccgagagataagtatatagtatttacaggcctatctggttctggtaaatcctca
ttagcttttgatactttatatgcagagggacagagaagatatgtagaatctttatctgcc
tatgctagacagtttttaggacaaatggataaaccagaagtagattatatagaagggtta
tcaccggccatatctattgatcaaaaaaccactaatagaaatccacgttcaactgttgga
actgtgacagaaatatatgattatttaagactgctatatgcaaaaataggaaaacctcat
tgccctaaatgtggaaaagaaataactcaacaaacagtagatcaaatggtagataaaata
atgactatggaggaaaggactaaaatacaagtgttatctcccattataaatggaagaaaa
ggtgagcacattaagactatagaaaacataataaaatcagggtatgtaagagccagaata
gatggaaatatagtagatttagaagaggaagaaataaagttagaaaaaaataaaaaacat
accatagaggctgtagtagatagattagtagttaaagaaggcatagaaagtagacttgca
gattctatggaaactgcattaaagctatcagaaggaatagtaataataaatgttgtggga
caagaggatatgctttttagtgaaaaatttgcttgtgtagattgtaatataagtatagga
gaaatagctcctagaatgttttcttttaactccccttatggaaagtgtgataaatgtgat
ggattaggtaccttaatggaaatagatgaggacttagttataccgaataaaagtaagagt
atagtagagggagcaataattccattaggcagtggtagtttaaaggaagattcatggact
tttagtatattaaaagctttgtcaaaggaatataaatttgatttaaatactcctatagaa
aaattagatcctaaaatagtaaagattattttatatggactagatggaaaaagaataaaa
gtaaattataaaaaagaaaatagaatcatggaattaaatcatgcttatgaaggtgttata
aataatcttagaagaagatatatagaaactaattctgattatataaaaagagatattgaa
agatatatgagtgataatccttgtccaaaatgcaaaggtgcaagacttcatgatgaggct
ttatctgttacagtagcagataaaaatatatttgagttttgtaatatgtccataaaaaaa
gaacttgattttatagaatctttagagttatctaaaaaagaggaaataataagcaatcaa
atactaaaagagattcgcagtagactaaaatttttaatagatgtaggtttagattatctt
acattatctagaaatgcatcaactttatctggaggagagtctcaaagaataagattggct
acacaaataggctctagtttagtaggggttttatatatattagatgaacctagtatagga
cttcatcaaagagataatgatagacttataaaaacattaaaaaatttaagggacttaggg
aatactttagtagttgtagaacatgacgaagataccataagagaagcagactatattgtt
gatataggtccaggtgctggtgaacatggtggagaagtagtagcagcaggaaccttagaa
gatataatgaataccgaaaagtctataacaggacaatatataaagggagttagaacaata
tcagtacctaaagaaagacgaaaatgtgaaggtaattatatatccataaagggagctaga
gaaaataatttgaaaaacgtaagcgctaaattccctataggattatttacttgtgtaaca
ggagtttcaggttcaggcaaaagtaccctagttaatgaaatattatataaaggtattcat
aaaaagctaaataattcaaaggataatccaggtaaacataaggagattactggcatagaa
aatgtagataaggttataaatatagatcaaagccctataggtagaaccccaagatccaat
cctgccacctatacgggagtatttgatattataagagaagttttttcaaatactcaagag
gctaagatgcgaggatataaaccagggagatttagtttcaatgtcaaaggtggaagatgt
gaggcttgcactggagacggaattataaaaattgaaatgcaatttttatctgatgtatat
gttccttgtgaagtatgtaaaggaaaaagatataatagagaaactttagaagtaaaatat
aaagggaagaatatatcagatgtattaaatatgactgtagaagaagctctagactttttt
caaaatattccacgtataaaaagtaagcttcaaactcttatggatgtgggcttaagctat
ataagattgggtcaatcctctacacaactttcaggaggggaagctcaaagaataaaatta
gcttatgagttatctaaaagaagtacaggaaaaactctctatatattagatgagcctact
actggacttcatatggaggatgtaaataagttaataagtatactacaaagattgacaaat
tcaggtaatactgtagtggttatagagcataatttagatgttataaaaaatgcggattat
ttaatagatttaggaccagaaggcggagaaaagggaggaactataatagcagagggaacc
ccagaaaaaatttcaagagctagtaactcatatacaggacaatatttaaaaaagatgtta
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (21)   
   Pfam (21)   
All databases (28)   

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