KEGG   Castor canadensis (American beaver): 109693768
Entry
109693768         CDS       T04791                                 
Symbol
Vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03250  Viral life cycle - HIV-1
ccan04144  Endocytosis
ccan04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109693768 (Vps4a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    109693768 (Vps4a)
  09143 Cell growth and death
   04217 Necroptosis
    109693768 (Vps4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccan04131]
    109693768 (Vps4a)
   03400 DNA repair and recombination proteins [BR:ccan03400]
    109693768 (Vps4a)
Membrane trafficking [BR:ccan04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    109693768 (Vps4a)
DNA repair and recombination proteins [BR:ccan03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    109693768 (Vps4a)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_14 AAA_22 AAA_25 AAA_5 RuvB_N IstB_IS21 AAA_17 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 RNA_helicase AAA_24 PhoH ResIII AAA_28 AAA_7 Mg_chelatase NACHT Parvo_NS1 bpMoxR DUF5906 AAA_30 YhdB
Other DBs
NCBI-GeneID: 109693768
NCBI-ProteinID: XP_020030905
UniProt: A0A250YI02
Position
Unknown
AA seq 437 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
VQYLDRAEKLKDYLRNKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSVVIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
DDLLKVKKFSEDFGQES
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgacaacgtcaaccctccagaaagccattgatctggtgacaaaagccacagaagaggat
aaagccaagaactacgaggaggcgctgcggctctaccagcatgctgtggagtatttcctc
cacgctatcaagtatgaagcacacagcgacaaggccaaggagagcattcgagccaagtgt
gtgcagtacctagaccgtgcagagaaactgaaagattacttacgaaacaaagagaagcat
ggcaagaagccagtcaaagagaatcagagtgagggcaagggcagtgatagtgacagtgaa
ggagataatccagagaaaaagaaattgcaagagcaactgatgggtgctgttgtgatggag
aaacccaacatacggtggaatgacgtagctgggctggagggggccaaagaggcccttaaa
gaagctgtcattttgccaattaaattcccacacttgttcacaggcaagcgtaccccttgg
cgagggatactgctctttggacctcctggcacagggaaatcctacctggccaaagccgtg
gcaacagaggccaacaactccaccttcttctctgtgtcctcctcagatctgatgtctaag
tggttgggggagagtgagaagctagtcaagaacctgtttgagctggccagacagcacaag
ccctccatcatcttcatcgacgaggtggattccctctgcgggtcccgaaatgaaaatgag
agcgaagctgcccgaaggatcaaaacggagtttttagtccagatgcaaggagtaggaaat
aacaatgatgggactctcgtacttggtgccacaaacataccctgggttttggattcggcc
attagaaggaggtttgaaaaacgtatttacatcccattgccagaggaagctgcacgtgcc
cagatgttccggttgcatctggggagcacacctcacaacctcacggatgccaacatccat
gaactggccaggaagacagaaggctactcgggcgcagacatcagcatcatcgtgcgggac
tccctcatgcagcccgtcagaaaagtacagtcagccacacacttcaagaaggtctgtggc
ccttctcgtaccaaccctagtgttgtgatcgatgaccttctgaccccatgctcaccagga
gaccctggggctatagagatgacttggatggatgttcccggggacaaactcttagagcct
gtggtttgcatgtcggacatgctgcggtctttggccaccactcggcccacagtgaatgca
gatgacctcctcaaagtgaagaaattctcagaggactttggacaggagagttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (31)   
   Pfam (31)   
All databases (54)   

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