KEGG   Cynara cardunculus var. scolymus (artichoke): 112511156
Entry
112511156         CDS       T05604                                 
Name
(RefSeq) autophagy-related protein 16-like isoform X1
  KO
K17890  autophagy-related protein 16-1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    112511156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112511156
   03029 Mitochondrial biogenesis [BR:ccav03029]
    112511156
Membrane trafficking [BR:ccav04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    112511156
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    112511156
Mitochondrial biogenesis [BR:ccav03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    112511156
SSDB
Motif
Pfam: WD40 ATG16 ANAPC4_WD40 NBCH_WD40 WDR54 Nup160 eIF2A Cytochrom_D1 Ge1_WD40 PROPPIN DUF6499
Other DBs
NCBI-GeneID: 112511156
NCBI-ProteinID: XP_024972403
Position
LG 4:17143597..17147896
AA seq 509 aa
MSEDEIAIQAIKHALKALRKRHLLEEGAHGPAFVALSKPIASQGSEWKDKAETLELELQQ
CYKAQARLSEQLVVEVAESRAAKALVQEKEALIPSLENDLSQARDECSRLIALLDEKTKA
LELLMDENKELRSQYEEMRARAINAEAENKTLVDRWMLQKMQDAERLNEANALYEDMLGK
LKASGLEQLARQQVDGVVRQSEEGAEYYVESTIPKTCNHRITAHEGGCASIVFENSSGKL
VSGGQDQTVKMWDTTTGQLTRTYNGCLGSILDLSITHDNRCVIAASSSNNLYVWDANSGR
VRHTLTGHVDKVCAVXVSRFSSRHVASSAYDRTIKVWDLNKGYCINTIIFPSNCNALSFS
PDGQTICSGHVDGHLRLWDIQTGKLLSEVAAHSSAVTSISLSRNGNTILTSGRDXLHNLF
DTRTLEVWGTLXASGNRVASNWSRSCISADDNYVAAGSVNGSVHVWSISSANIVSTLKEH
TASVLCCSWSGLGKPLATSDKNGIICMWT
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcagaggatgaaattgcgatacaagcaataaaacatgctttgaaggctcttcgaaag
cggcatttgttggaggagggagctcatgggcctgcttttgtagctctttctaaacctatt
gcatctcagggttcagaatggaaggacaaggcagaaactcttgagttggaacttcagcaa
tgttataaagctcaagctcgattatctgagcagcttgtggttgaagttgccgagtctaga
gctgcaaaagctttagttcaagagaaagaagccttaattcctagtcttgagaacgatctt
tctcaagcaagggatgaatgttcgcgcttgatagcacttttagatgaaaagactaaagcc
ctagaattgcttatggatgaaaataaagagctcagatcccaatatgaggagatgagagct
agagctatcaatgcagaggctgaaaacaagacattggttgatcgttggatgttgcagaaa
atgcaggatgctgagcgccttaacgaggccaatgctttatatgaagacatgcttggtaag
ctcaaagccagtggtctggagcaacttgctcggcagcaagtggatggtgtggtccgccaa
agtgaagaaggtgccgagtactacgtagaatcaacaataccgaaaacatgcaaccatagg
atcacggctcatgagggaggttgtgcctctatagttttcgaaaacagttccggtaaattg
gtcagtggggggcaggaccagactgttaaaatgtgggacacaaccacaggtcagctaact
cgaacctacaatggttgtttgggatctatccttgatctcagcatcacccatgataacaga
tgcgtaattgcagcaagtagctcaaataatctatatgtatgggatgcaaattcaggccga
gtccgccatactctcacgggacatgtagataaagtatgtgctgtakatgtgagcagattc
tcgagccgccatgttgccagttcagcttatgaccgaaccatcaaagtatgggatctcaat
aaaggttactgtattaacacaatcattttcccaagtaactgcaatgccctatctttcagc
ccagatgggcagactatttgttcaggtcatgttgatgggcacctacggttatgggatata
cagacaggaaaactactcagtgaggttgctgcacattcttctgctgtgacctctatctct
ctgtccagaaatggtaatacaatacttacaagtgggagagataasttgcataatttattt
gatacaaggacscttgaagtwtgggggacattaamagcaagtgggaatagagttgcatct
aattggagtagatcttgtatcagtgccgatgacaattatgttgctgctggatctgtcaat
ggttcagtccatgtctggtcaatatctagtgcgaacatagtgagcactctcaaggaacac
acagcttcagtattatgttgttcttggagtggtcttggaaarcctctagctacatcagat
aagaatggaatcatttgtatgtggacatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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