KEGG   Chondrus crispus (carragheen): CHC_T00002195001
Entry
CHC_T00002195001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03022  Basal transcription factors
ccp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CHC_T00002195001
  09124 Replication and repair
   03420 Nucleotide excision repair
    CHC_T00002195001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00002195001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00002195001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CHC_T00002195001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CHC_T00002195001
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 VWA_3 IBR zinc_ribbon_15
Other DBs
NCBI-GeneID: 17320941
NCBI-ProteinID: XP_005713224
UniProt: R7Q7Q8
AA seq 421 aa
MYAQAARARARKQVDVDKDDDELKRAKEAYAWESSNVRSWDQIEEDPETGKLKSFVREKQ
IARKRSRDDGFTGVRRGIIRFCVLIIDMSEHVRATDLKPSRADLFCESVSSFAKEYFDQN
PISQLSVVMTRDYEAIKLSSFSSNEKHHIEAMRKALRLGPSGAASLQNALKIANKNLSTV
PPYAMKEVIVCYGSLSTCDPGDIHATINLLASSKVRCSAVGLGAELHILRVLTKSTNGTY
SIAMNEEHFRDSLGSHVIPPPTTTKQVSASLIRMGYPILQRIDEPTLYCNNPSVRGRLGY
NCPRCSGWLSEMPCECTLCGLTLVSSPHLARSYHHLFPVPKFISLETSDLDLRLQSKEDE
AKFAKAMKLLPIDVLRCTGCAKLLEKEASLRLLCPSCVKVFCVDCDAFVHDSLHHCPGCG
V
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgtacgcgcaagccgccagggcccgcgcccgcaaacaagtggacgtcgacaaggacgac
gatgaactgaagcgcgccaaggaagcctatgcatgggaatccagcaacgttaggtcctgg
gatcaaatcgaggaggatccggagactggaaagctcaagtccttcgtccgcgaaaaacaa
attgcccgaaagcgaagccgcgacgacggtttcacgggcgtgagacgcggcatcattcgg
ttctgcgtactcatcatcgacatgtccgagcacgtgcgagcaacagatttgaagccgtct
cgcgccgaccttttctgcgagtccgtttcgagctttgccaaggagtatttcgatcagaac
cccatttctcaattgagcgtcgtcatgacccgagactatgaggccatcaagttgtctagc
ttttcttccaatgagaagcatcacatcgaggccatgcgaaaggctttgcgtctaggaccg
agtggtgcagcatctctgcagaatgcgctcaagattgccaacaagaatttgtccaccgtt
ccgccttacgcaatgaaagaagttattgtgtgctacggatcgttgtccacatgcgatcct
ggggatattcatgctacaattaatttactcgccagttccaaagtgaggtgttctgccgta
ggactcggtgcagagctacatattctccgtgtcttgacaaagagcacaaacggcacatac
tccatagcgatgaacgaggagcatttccgcgactccctcggcagtcacgttattccaccg
ccgaccacaacgaaacaggtcagtgcctctctcatccggatgggatacccaatacttcaa
cggattgatgagcccacattatactgtaacaatccaagcgtcagagggcgactaggatac
aactgtccgcgctgttcgggatggctcagcgaaatgccatgtgaatgtactctgtgcgga
ctcacacttgtttcaagccctcacttagcaagatcctaccatcacttgtttccggttcct
aaattcatttcgcttgaaaccagtgatctggatctacgtttacaatcgaaagaggatgaa
gcaaagttcgcaaaggctatgaaattacttccgatagacgtgctacgctgcacaggatgt
gcaaaactactcgaaaaagaagcttcgctgcgtctcctttgcccaagctgcgtaaaggtg
ttttgcgttgactgtgatgcttttgtccatgactcgctgcaccattgcccaggttgcggc
gtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system