KEGG   Chondrus crispus (carragheen): CHC_T00010125001
Entry
CHC_T00010125001  CDS       T02916                                 
Name
(RefSeq) Sm Like Protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03018  RNA degradation
ccp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHC_T00010125001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHC_T00010125001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00010125001
   03041 Spliceosome [BR:ccp03041]
    CHC_T00010125001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CHC_T00010125001
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CHC_T00010125001
Spliceosome [BR:ccp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CHC_T00010125001
SSDB
Motif
Pfam: LSM SM-ATX Vert_HS_TF
Other DBs
NCBI-GeneID: 17324493
NCBI-ProteinID: XP_005716779
UniProt: R7QHR4
AA seq 184 aa
MPKKFDYSLNFVLIILNFPSVPAQPTLIPSHPFTSLHIPAPSVSSLRPTPPHPRHTLTHC
SPRHLLHNTRAHPLSAMLPLSLLKSSTGYPILVELKNGDTYNGHLSNIDQWMNVNLNDVI
RTSKDGDHFWSVPEMYIRGNTIKYLRVPDAVLDAVADEKHARDATVRCIHPLILHPRIHP
VFCP
NT seq 555 nt   +upstreamnt  +downstreamnt
atgccgaaaaagtttgattatagcctcaactttgttttaattattttaaattttccctcc
gttcccgcacaaccaaccctcatcccttcacatcccttcacatcccttcacatccctgct
ccctccgtctcctccctccgtcccaccccacctcatccccgccacactctcactcactgc
tcgccccgccatctgctgcacaacacacgggcgcacccactctccgcaatgctccccctc
tccttgctcaagtcctccacgggctaccccatcctggtcgagctcaagaacggcgacacg
tacaacggccacctttccaacatcgaccagtggatgaacgtcaacctcaacgacgtcatc
cgcacctccaaggacggcgaccacttctggtccgtcccggagatgtacatccgcggcaac
accatcaagtacctccgcgtccccgacgccgtcctcgacgccgtcgccgacgagaaacac
gcccgcgacgctacagtacgttgcattcatcccctcatcctccacccacgcattcaccct
gtgttctgtccataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (43)   

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