KEGG   Corvus cornix (hooded crow): 104685260
Entry
104685260         CDS       T03546                                 
Symbol
TNPO1
Name
(RefSeq) transportin-1
  KO
K18752  transportin-1
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104685260 (TNPO1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccw03019]
    104685260 (TNPO1)
   03009 Ribosome biogenesis [BR:ccw03009]
    104685260 (TNPO1)
Messenger RNA biogenesis [BR:ccw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104685260 (TNPO1)
Ribosome biogenesis [BR:ccw03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    104685260 (TNPO1)
  Pre-60S particles
    104685260 (TNPO1)
SSDB
Motif
Pfam: HEAT_EZ HEAT HEAT_2 Arm IBN_N Vac14_Fab1_bd Cnd1 PDS5 Adaptin_N CEP104-like_TOG MMS19_C Dopey_N RTP1_C1 UNC45-central DUF3689
Other DBs
NCBI-GeneID: 104685260
NCBI-ProteinID: XP_039422642
Position
Z:65314263..65384567
AA seq 890 aa
MEYEWKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV
MLLEVRMDRLLPHMISIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKEVLCRHLTKL
IPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDIRPRFHRSKTVAQQHEEDGIEDDDDD
DDELDDDDTISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLHNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPSGVVQDFIFFCDAVA
SWISPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq 2673 nt   +upstreamnt  +downstreamnt
atggagtacgagtggaagcccgacgagcaggggctccagcagatcctgcagctgctcaag
gagtcccagtccccggacaccacaacgcagagagccgtgcaacaaaaactagaacaactc
aatcagtatccagatttcaacaactacctgatttttgttcttacaaagttgaagtctgaa
gatgagccaacacgttccttgagtggtcttatcttgaagaataatgtaaaagcacatttt
cacaactttccaaatggggtaactgacttcattaaaagtgaatgtctgaacaacatcggt
gattcctcccccttaattagagctactgtagggattctgataacaaccattgcctcaaaa
ggggagttacagaattggcctgagctcttgccaaagctttgcagcctgttggattctgaa
gattacaatacctgtgagggcgcttttggcgctcttcagaagatatgtgaagattctgct
gaaattttagatagtgatgtattggaccggccactcaatatcatgatacccaagttcttg
cagttcttcaagcacagcagtccaaaaatacggtctcatgcagtggcatgcgtcaatcag
tttatcatcagcagaactcaagctcttatgttgcacatagattcttttattgagaatctt
tttgcattggctggtgatgaggagcctgaagtacgcaaaaatgtttgccgtgctctggta
atgttgctggaagttcggatggatcgcctgcttcctcatatgattagtatagttgagtac
atgcttcaaaggacccaggatcaagatgaaaatgtggctttggaggcttgtgagttttgg
ctgactttggctgaacagccgatttgtaaagaggtattatgtcggcatcttactaagctg
atacctgtgctggtaaatggtatgaaatattcagagattgatattattctgttgaagggg
gatgttgaagaagacgaagctattccagatagtgagcaggacataaggcctcgttttcat
cgttcaaagacggtggctcagcaacatgaagaagatggtattgaagatgatgacgatgat
gatgatgaacttgatgatgatgatactatttctgactggaatttaaggaaatgttctgct
gctgctctagatgtcctagctaatgtgtttcgtgatgaacttctgcctcacatcttgcca
ctgttgaaggaattgctcttccaccccgagtgggtagttaaagaatctggtatccttgtt
cttggtgcaattgctgaaggctgcatgcagggtatgattccatatcttccagagctaatc
cctcaccttattcagtgcctctctgacaaaaaggctcttgtgcgctccattacatgctgg
actcttagtcgctatgcacactgggtagttagtcaacccccagacacatacttgaagcca
ttaatgactgagttgctaaagcgtatcttggatagcaacaagagagtacaagaagctgcc
tgcagtgcctttgctactctagaagaggaggcttgtacagagcttgttccttatcttgca
tatatacttgacactttggtcttcgcatttagtaaataccagcataaaaacctgctcatt
ctttatgatgctataggaaccctagcagattctgtaggacatcatctaaataaaccggaa
tatattcagatgctaatgcctccattaatccagaagtggaacatgctgaaggatgaagat
aaagatctcttccctttattagagtgcctgtcgtcagttgctactgccttgcaatctggc
tttcttccatactgtgaacctgtgtaccagcgttgtgtaaatctggtgcagaagacactt
gcacaagccatgttgcataatgcacagccagaccaatatgaggctccagataaagatttc
atgattgtggctcttgatttactcagtggtttagctgaaggacttggaggcaacattgaa
cagctagtggctcgcagcaatatcctgacactaatgtaccaatgtatgcaggacaaaatg
cctgaggtacggcagagttcttttgcattgttaggtgacctgacgaaggcatgttttcag
catgttaaaccttgcatcgctgatttcatgccaattttgggaaccaacctaaaccctgaa
ttcatttctgtgtgtaacaatgccacctgggcaattggagaaatctctatccagatgggt
atagaaatgcagccttatattccaatggtcttgcaccagcttgtagaaataattaacaga
cccaacacaccaaagacgttgttagagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgcacctct
cttcgaaacataagagacaatgaggaaaaggattcagcattccgtgggatatgtaccatg
attacggtcaaccccagtggagtagttcaagactttatttttttttgtgatgctgttgca
tcatggattagcccaaaagatgatcttcgagacatgttctgtaagattcttcatggattt
aaaaatcaagttggggatgagaattggaggcgtttctctgaccagtttcctcttccctta
aaagagcgccttgcagcttactatggagtttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (15)   
   Pfam (15)   
All databases (40)   

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