KEGG   Corvus cornix (hooded crow): 104693629
Entry
104693629         CDS       T03546                                 
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X2
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccw  Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ccw03000]
    104693629 (RC3H1)
   04121 Ubiquitin system [BR:ccw04121]
    104693629 (RC3H1)
Transcription factors [BR:ccw03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    104693629 (RC3H1)
Ubiquitin system [BR:ccw04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104693629 (RC3H1)
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 Prok-RING_4 zf-CCCH zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 FYVE zf_CCCH_4 zf-CCCH_4 Vesi_VP2 PaaA_PaaC Baculo_IE-1 zf-RING_4 zf-RING_10 zf-RING_6
Other DBs
NCBI-GeneID: 104693629
NCBI-ProteinID: XP_010404683
Position
8:26582537..26657866
AA seq 1123 aa
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLIAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLSNRKTSALPNGIVSTGSTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPADLPSVSVTKQLQMVPRGSQLYNAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSVPEPGTPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPMYPPHYDGRRVYPPMQPYQREDMVRGSPVPIDIPQTAVPLYVPESRDRYQQTEA
YCPVAPHLGPIRASCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKAMR
EQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGAATKSI
ISDYSPYGTHGGWGGSPYSPHQNIPSQGRFSDRERLSMSDVAGHGKQLPSAEREQQLRME
LQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELH
QVEREIGKRTRELSMESQSSLDMKNKLGSTKQTENGQLEPQNKVPAEDLALTFSDVPNGS
ALTQENIGLLSNNMASLSLSEDPEGGGDSHDSQRAGVIPTSAP
NT seq 3372 nt   +upstreamnt  +downstreamnt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagact
ttcgacgaaacaatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacactgac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccgattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattggcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtacattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattctccagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctttaaagctggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccgcgattccctcaggcttccaaaact
agcattgggcatgttgtccagctcctttacagagcctcatgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacttacgaagctctgaga
agagaacatgattcccagatagttcaaatagctatggaagcaggtttgcgcattgcacca
gaccagtggtcctcgctgttatatggagaccagtctcacaaatcccacatgcagagtatc
attgacaagttgcagaccccagcctcctttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcacctagaactcctg
gcaaatattgatcccagtccagatgctccgcctccaacatgggaacaactggaaaatgga
ctaattgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggaggatgtccccgaggggccagctgcaccttcgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggatttgtccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacggtgacgcaactaatttctcgagggactgactccagttatgaaactgccctg
aagccagggaagatggaccatctgagtagcagcgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctctatttctgccttgccagtgaaccctcatcctgtgcctgct
cgggcgccagcagatctgccctcagtgtctgtcaccaagcagttgcagatggtaccccga
gggtctcagttgtacaatgcacaacaagcagatatgttttatcaagaccccagaggagct
gccccatcatttgagccagcaccttaccaacaaggtgtgtactatcccacccagtccatg
tctcgctttgtccgacctcctccatcagtgccggagccgggcacgccatacctggagcac
tacgggccgtacctgccagagcgtgtggtgagcccacagtacccacagccacaggggtac
ccgaccctggcgcagcccatgtacccaccacattacgatggccgccgcgtgtaccccccc
atgcagccctaccagcgggaggatatggtgcggggcagcccagtgcccattgacatccca
caaacggctgtgcccctctacgtacctgagtccagagacagatatcagcaaacagaggct
tattgcccagtggctccacatctcggcccgattagagcttcgtgccacaggcctcatccc
agcctggatgagcttcaccgacgaaggaaagagatcatggcccagctagaagagaggaag
gtgatttctccgcctccttttgcaccatcaccaacattgcctcatccttttcactcagag
gagtacttggatgaagacctgaaggtagctgggaaatacaaaggaaatgactacagccag
tactctccctggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaaggagtgtggagatggcgaatgtggatagtaaagccatgcgt
gagcagcggctggacatgcagcgacgagcggccgagacaggggatgatgacctcattcca
tttggagaccgaccaactgtttcaagatttggggccatctctcgtacttccaaagccatg
taccagaactctgggcccatgcaggccatggcggttcagggagctgccactaaatccatc
atttcagactacagtccttatggaacccatggtggctggggaggctctccatattctcct
catcaaaatataccttctcagggacgtttcagtgacagggaaagactctccatgtcggat
gtggctggtcatgggaagcagttgccctcagctgaacgagagcagcagttgcgcatggaa
ctgcagcaagttgaccatcagatcagccagcagacacaaatgcggggactggaggctgtt
agtaacaggctgctgttgcagagagaggcgactaccctggcaggccaaccacagccccca
cccccacctcccaagtggcctgggatgatctcaagtgaacagctgagcttggagctacac
caggtggaaagggaaattgggaagagaacccgtgagctgagcatggagagccagtcttcg
ctggatatgaaaaacaagctgggcagcactaaacagacagaaaatggacaattagaacca
caaaacaaggttccagctgaggaccttgcactgacattcagtgatgttccgaatggatca
gctttgacccaagagaacattggtctcctgtcaaacaatatggcatctctcagcctgtca
gaggaccccgagggaggaggagatagccatgattcccagcgagcgggagtaatacccaca
tctgctccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (20)   
   Pfam (20)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system