KEGG   Caenorhabditis elegans (nematode): CELE_K07A12.4
Entry
CELE_K07A12.4     CDS       T00019                                 
Symbol
hbs-1
Name
(RefSeq) Tr-type G domain-containing protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CELE_K07A12.4 (hbs-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_K07A12.4 (hbs-1)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     CELE_K07A12.4 (hbs-1)
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 MMR_HSR1 GTP_EFTU_D2 DUF2213 AAA_22 Dynamin_N Septin PBP1_TM
Other DBs
NCBI-GeneID: 172672
NCBI-ProteinID: NP_001021556
WormBase: WBGene00010622
Ensembl: WBGene00010622
UniProt: Q564V6
Position
I:complement(8687634..>8690937)
AA seq 592 aa
MSRHRAIRNLNLEDEMDDDYDDDYDDYEDEENPEKQYTYDRNSLSTNYYTYLTDSGRNSP
ALPAPHPAPTTSLSSTIVRNMTAPLLHQNQKPPKNLNSRPSTPQTSSNLNTPKRTPQVKN
LQAESTTPTVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDLINLIVVGHVD
AGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGR
TSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHA
LLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSVFLTRQAGFSKPKFVPVSGFTGEN
LIKRMELDWYDGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVE
KDDKVYIMSSVTAATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDT
LIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRF
IAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKVITPQ
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgtcccgccaccgtgctattcgaaatttaaatttagaagatgaaatggacgacgattat
gacgacgattacgacgattatgaagatgaggagaacccggaaaagcaatatacatatgat
cgtaattcattatccacaaactactatacatatctgacagatagtggtcgcaattcacca
gctcttcctgctccacatcctgctccaacaacttccctatcttctactattgtacgaaat
atgacagctccattgctccatcaaaatcaaaaaccaccgaagaatcttaatagtcgaccg
agtacaccacaaacgtctagcaatttgaatactccaaaaagaacgccgcaagttaaaaat
cttcaagcagaatcaacaactccaactgtgagccgcccatcttctgaagtcgatttaaca
tcatttcgacgcaatcaactgcagaacatcgcgaaagctccgtcagttgcccgaaaaaca
ccaaaaccaagagttgctgataaagatttaattaacttgattgtcgttggacatgtcgat
gcaggaaaaagtactctcatgggtcatttacttcatgatcttgaagtggtagatagccgt
acaatcgacaaattcaaacatgaagcggctagaaatggcaaagcttctttcgcgtatgcc
tgggtacttgatgaaacggaagaggaacgtgagcgcggagttaccatggacattggaaga
acaagcttcgaaacttcacatcgacgaatcgtgcttctcgatgctccaggacataaagat
tttatttcaaatatgatcacaggaacgtcacaagctgatgcagccatccttgttgtgaat
gcgaccaccggagaatttgaaacaggatttgaaaacggaggacagacgaaagaacatgcc
ttactgctcagaagtttaggagtaacacaacttattgtggctgtgaataaactggatacg
gtagattggtcccaagatcgattcgatgaaatcaaaaataatctctccgtgtttttaact
cgtcaggctggcttttctaaaccaaagttcgttccagtttctggttttactggagagaat
ttaataaaacgaatggaattagattggtacgatggtccatgtttattagagttaattgac
agtttcgtagcaccgcaaccaccttctgatggaccactacgaattggaatcagtgatgtt
ttgaaggttgcatcgaatcaacttgtcgttagtggtaaaattgagtcaggagaagtggaa
aaagatgataaagtatatataatgtcaagtgttactgcagctactgtgaaagaatgcgca
aataatgacggttcaaggcactgctttgctggagattatattctattgactcttcaaggc
acatttgaacctgaatccattcaaacaggctctgttgttgtacgtgctggtccagatact
ctgattccatcgaaaaagtttgaagttcgattggttgcctttgaaattgctatgcctatt
atcaagggtgccaaagccgagttatatgcacattctttgtgtgttccatgtactttcacc
aatcttctgtatacaatcaacaaatcaaatggagaaatattaaaaaaaggaccgagattt
attgctaaaggagcgtcggcagttgttgaaatcgaaactgaatatgatatcgcaattgaa
acattcacaagttgccgagctcttggacgagtcacttttcgagctggtggaaacacaatt
gcagctggaattgtcgagaaagtgatcactccacaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (48)   

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