KEGG   Canis lupus familiaris (dog): 485544
Entry
485544            CDS       T01007                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X2
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    485544 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfa03400]
    485544 (LIG4)
Enzymes [BR:cfa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     485544 (LIG4)
DNA repair and recombination proteins [BR:cfa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     485544 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme ATG17_like LIG3_BRCT
Other DBs
NCBI-GeneID: 485544
NCBI-ProteinID: XP_005634154
Ensembl: ENSCAFG00000006031
VGNC: 42675
Position
22:complement(56752066..56759380)
AA seq 844 aa
MRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTPTGTRGDAGDFAT
IAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARKKDLIKKSLLQLITQSSALEQKWLI
RMIVKDLKLGFSEQSVFSAFHNDAAELHNVTTDLEKVCRQLHDPSIGLSDISITLFSAFK
PMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYTDQFGDSPR
EGSLTPFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDLQTCYCVF
DVLMVNNKKLGRETLKKRYEILTSVFTPIPGRIEIVQKTQAHTKKEVIDALNEAIDKREE
GIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMMSHFLCAV
AEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKALPSSILCGTEKPEV
YIEPCNSVIVQVKATEIVSSDMYKTGCTLRFPRIEKIREDKEWHECTTVDDLEQLRGKAS
GKLASKHLDIGGDDEPQEKKRKAAPKIKKIIGIIEHLKAPNLSNINKVSNIFEDVEFCVM
SGTDSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDVVKPEWLL
ECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDLDLNQLKEVFSGIKNSSKQ
TPREMASLIADLEYRYSWDRSPLCLFRHCIVYLDLYAVINDLSTKIEGTRLAITALELRF
HGAKVVSCLAQGVSHVIIGEDHSRVAVLKSFRRTLKRKFKILQQDWVTESIDKCELQEEN
QYLV
NT seq 2535 nt   +upstreamnt  +downstreamnt
atgagacttattcttcctcagctagaaagagagagaatggcctatggaatcaaagaaact
atgcttgctaaactttatatcgaattgcttaatttacctaaagaaggaaaagacgccctt
aaacttttaaattacagaacacccactggaactcgtggagatgctggggactttgcaaca
attgcatattttgtgttgaaaccaagatgtttgcagaaaggaagtttaaccatacagcaa
gtaaatgacattttagactcaattgccagcaataattctgccagaaaaaaggacctgata
aagaaaagtcttcttcagctaataactcagagttcggcactggaacaaaagtggcttata
cggatgattgtaaaagacttaaaacttggttttagtgagcaatctgtattctctgctttc
cataatgatgctgccgagttgcataatgtcactacagatctggaaaaagtctgtaggcaa
ctgcatgatccttccataggactcagtgatatttctatcactttattctctgcctttaaa
cctatgctggctgctatagcagatattgagcgaatagagaaggacatgaaacaccagagt
ttctacattgaaaccaagctagatggtgagcgtatgcaaatgcacaaagacggggatgtg
tatcagtatttctcccgaaatggatataactatacggatcagttcggcgattctccacgg
gaaggttctcttacaccgttcattcacagtgcattcaaaacagatgtacagatctgtatc
ctggatggcgagatgatggccttcaaccctaatacacaaacttttatgcaaaaggggaat
aagtttgatatcaaaagaatggtggaggattctgatctgcaaacctgttactgtgttttt
gatgtactgatggttaataataaaaagctgggacgtgaaacgctgaaaaagaggtatgaa
attcttactagtgtttttacaccaataccaggtagaatagaaatagtgcaaaaaacacaa
gctcatactaagaaagaagtaatcgatgctttgaatgaagcaatagataaaagagaagag
ggaatcatgataaaacatcctctatctatttacaagccagacaaaagaggtgaaggatgg
ttaaaaattaagcctgagtacgtagatgggctgatggatgaactggacatcttaattgtt
gggggctattggggcaaaggttcacgaggtggaatgatgtctcattttttgtgtgctgta
gcagagaagcctcctcctggtgaaaaaccgtcagtgtttcatactctgtgccgtgttggt
tcaggttatactatgaaagaactgtatgatctgggtttaaaattggccaaacattggaag
cctttccataaaaaagctctaccaagcagcattttatgtggaacagagaagccagaggta
tacattgagccttgtaattctgtcattgttcaagttaaggcaacagagattgtctccagt
gatatgtataaaactggctgcacattgcgttttccacggattgaaaagataagggaagac
aaggagtggcatgaatgtactaccgtggatgacttagagcaacttcgagggaaagcgtct
ggaaagcttgcatctaaacaccttgacataggtggtgatgatgaaccacaagaaaagaag
cggaaagctgccccaaagattaagaaaattattggaattatcgagcacttgaaagcaccc
aacctttctaatataaataaggtttctaatatatttgaagatgtggagttttgtgttatg
agtggaacagacagccatccaaagcctgacctggagaacagaattgcagaatttggtggt
tatatagtacaaaacccaggcccagacacgtactgcgtgattgcaggatcggagaacatc
agagtgaaaaacatcatttcttcaaataaacatgatgttgtcaagcctgagtggctgtta
gagtgttttaagaccaaaagctgtgtgccgtggcagcctcgctttatgattcacatgtgc
ccatcgacaaaagaacattttgcccgtgaatatgattgttatggtgacagttattttgtt
gatctagatttgaaccaactgaaggaagtgttctcaggaattaaaaattctagcaaacaa
actccaagagaaatggcttctctgattgctgatttagaatatcggtattcctgggaccgc
tccccactctgtctattccgacattgtattgtttatctggacttgtatgctgttattaat
gacttgagtaccaaaatcgagggaacgagattagcaattacagctttggagcttcgattt
catggagcaaaagtagtttcttgcttagctcagggagtgtctcatgtaatcattggggag
gatcatagtcgtgttgcagttttaaaatcttttcgaagaactcttaagagaaagtttaaa
atcctgcaacaagattgggtaactgagtccatagacaagtgtgagttgcaggaggaaaat
caatatttggtttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (20)   
   RefSeq(pep) (20)   
DNA sequence (20)   
   RefSeq(nuc) (20)   
Protein domain (10)   
   Pfam (10)   
All databases (74)   

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