KEGG   Capra hircus (goat): 102177438
Entry
102177438         CDS       T02910                                 
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
chx  Capra hircus (goat)
Pathway
chx04820  Cytoskeleton in muscle cells
chx04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:chx00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102177438 (COL27A1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    102177438 (COL27A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:chx00536]
    102177438 (COL27A1)
Glycosaminoglycan binding proteins [BR:chx00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102177438 (COL27A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 102177438
NCBI-ProteinID: XP_017908150
EnsemblRapid: ENSCHIG00000026756
Position
8:103096710..103248243
AA seq 1841 aa
MGAGSARGTRGTAAAAAAQGGGFLFTWILVSLACHLASTQGAPEDVDVLQRLGLSWTKAA
GGRSPPPPGVIPFQTGFIFTQRARLQAPTAAVVPTALGTELALVLSLCSHRVNHAFLFAV
RSRKRKLQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELHGRTVTLVTACGQR
RVPVSLPFHRDPALDPDGLFLFGKMSPHAVQFEGALCQFSIYPVAQVAHNYCTHLRKQCG
QADTYRPQLGPFFPRDSGTPLVFQTDLARLGLENLTTATPALESRPAGRGPGVTVGPAVP
IRPMRTSTTRPPQPIASHPAWTPLPPAKLSASEGPPPVSPVSPTSSPRPVQPLQKNTATK
TSKRHPATPSALSPSIAPVRSPRPTQKTAPPAFTKPAPPTKKPVLPTSQPIPAKVSRPTV
KPIQRNPGMPRLLPPRARPLPPAAASSKRPLPPVVQAEAKMSSHASVPAPARTSTHRPPP
ATVLPPSPVPSPSPPRTARPRATAMPPTFAPGSASTGSKKPTGSEATKKARPRKPVPLRS
GKAARDVPLNDPTRGSNPRQPRARQQTTLAPALAPARFLSSSPQPISTGYSFFHLVGPTP
FLLLMGPPGPKGDCGLPGPPGLPGLPGPPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPG
LSPGKAHDGAKGDMGLPGLTGNPGPLGRKGQKGYPGPTGHPGEQGQPGPEGSPGAKGYPG
RQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERG
PPGLDGNPGELGLPGPPGVPGLIGDMGTLGPIGYPGPKGMKGLMGNVGEPGLKGDKGEQG
VPGVSGDAGFQGDKGSQGLPGFPGARGKPGPVGKVGDKGSIGFPGHPGPEGFPGDIGPPG
DNGPEGVKGKPGARGLPGPRGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGPDGLKG
EPGDAGRPGPVGEQGLLGFIGLVGEPGIMGEKGDRGMIGPPGAPGPKGSMGHPGTPGVVG
NPGEPGPPGPPGSRGPSGMRGAKGRRGPRGPDGPAGEQGSKGLKGPPGPQGRLGQPGQQG
VAGERGHLGTRGFPGLPGPSGPPGAKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPG
LPGEAGMKGDLGPLGIPGEQGLIGQRGEPGLEGDSGPAGPDGLKGDRGDPGPDGERGEKG
QEGLKGEDGPPGPPGITGVRGPEGKPGKQGEKGRMGAKGAKGYQGQLGEMGVPGDPGPPG
TPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIMGPLGPPGPKGEKGEQGEDGKAE
GPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGNPGQQGQPGHPGPRGRPGPKGSK
GEEGPKGKQGKAGAPGRRGIQGLQGLPGPRGVVGRQGPEGVAGPDGFPGRDGQAGQQGEQ
GDDGDPGPMGPAGKRGDPGVAGLPGAQGPPGFKGESGLPGQMGPPGKRGTEGGMGLPGNQ
GEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGSVGKEGIIGPLGIL
GPSGRQGPKGDKGSRGDLGLQGPRGPPGPRGQPGPPGPPGSPIHFQQDDLGAAFQTWMDT
SGALRAEGYSHPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQK
MVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEV
TQQITIHCLNMTVWQEGTGRTPAKQAVRFRAWNGQIFEAGGQFSPEVSMDGCKIQDGRWH
QTLFTFRTQDPQQLPIVGVDNLPPASSGKQYRLEVGPACFL
NT seq 5526 nt   +upstreamnt  +downstreamnt
atgggagcgggatcggcgcgggggacccgaggcacagcggcggcggcggcggcgcaaggg
ggggggtttctcttcacctggatcttagtctcgctcgcctgtcacctggcctccacccaa
ggagctcctgaagatgtggacgtcctccagcggctgggcctcagctggacaaaggcggcg
ggcggccggagccccccacccccaggggtcatccccttccagacgggcttcatcttcact
cagcgggcccggctccaggctcccacggccgccgtcgtccccaccgccctgggcacggag
ctggcgctggtgctcagcctctgctcccaccgggtgaaccatgccttcctcttcgccgtc
cgcagccggaagcgcaagctgcagctgggcctgcagttcctccccggcaagactgtggtc
cacctggggccccggcgttctgtggccttcgacctcgatgtccacgacgggcgctggcac
cacctggccctggagctccacggccgcacggtcaccctggtgacagcctgtgggcagcgc
cgggtgcccgtctcgctgcctttccacagggacccagcgctcgaccctgatggcttgttc
ctctttgggaagatgagcccgcatgcagtccagttcgagggggccctgtgccagttcagt
atctaccccgtggcgcaggtcgctcacaattactgtacccacctgagaaagcagtgtgga
caggctgacacctaccggccccagctgggacccttcttcccccgagactctggcacaccc
ctcgtcttccagaccgacctcgcccggttgggcctggagaatctgaccactgccacgccg
gccctggagtcacggccggcaggcagggggcctggggtgactgtggggcctgccgtgccc
atcaggcccatgaggactagcaccacacgcccgccccagcccatcgcatcccatccagcc
tggacccccctgcccccagccaagctatcagccagtgaagggcctcctcccgtgtcccca
gtctctcccaccagctcccctagacctgtccagccactgcagaagaacacagccaccaag
acctccaaaaggcaccccgccacaccttcagccctttctccttcaattgcccccgtcaga
agcccccgccccacccagaagacagctccgcctgccttcacaaagccagccccacccacc
aagaagccggtgctacctacttcccagcccattcctgccaaagtctcccgtcccacagtg
aagccgatccagaggaaccccggcatgcccagactcctgccacccagagcccggccccta
cctccagctgctgcctcctctaaaaggcctctgcccccagtggtccaggctgaggccaag
atgagtagtcatgccagtgtgccggctcctgcccgcaccagcacacacagacctccccca
gccacagtcctgcccccgtcacctgtccccagtcctagccctcccaggaccgctcggcca
agggccacagcaatgcctcccacctttgctcctggttcagcctccactggaagcaagaaa
cccactggatcagaagccacaaagaaagccagaccccggaagcccgtcccgctcagatcc
gggaaggcagcccgggatgtcccgctgaacgatccgacaagggggtccaaccccagacag
ccccgggccaggcagcagaccaccctggccccagccctggccccagcgcgattcctgtcc
tccagccctcaacccatcagtactggctattcgttcttccacctggtgggacccacacct
ttcctgctgctgatgggacctccgggacccaagggagactgtggtttgccgggtccccct
ggactgcctgggcttcctggaccccctggcgcccggggtcctcggggtcctcctgggcct
tatggaaatccaggcctccctggcccccctggagccaaaggacagaaaggggaccccggg
ctctcaccaggaaaggcccacgatggggcaaagggcgacatgggcttgcccgggctcact
gggaatccaggaccccttggacgaaagggacagaagggttatcctggacctacggggcac
cccggagaacaggggcagccaggacccgagggtagcccaggggccaaaggttaccctggc
aggcaggggctgcctggacctgtaggagaccctgggcccaaaggcagccggggctacatt
gggctcccggggctcttcggcctgccagggtccgatggagagcgaggtctgcctggcgtt
cctggcaagaggggcaagatgggtaggccggggtttcctggagactttggggaaagaggc
cctccgggactggatggaaaccctggagaactgggcctgccagggcccccaggagtcccc
ggcctcattggcgacatgggaacattgggtccgattggctacccaggacccaagggcatg
aagggactgatgggaaacgtgggggaacccggactgaaaggtgataagggtgaacaaggg
gttccaggtgtgtcaggagatgccggattccaaggagacaaggggagccagggcttgcca
gggttccccggcgcacgggggaagccagggcctgtgggcaaagttggagacaaaggatcc
attgggtttcctgggcaccccggacctgagggattccctggagacattggcccccccggg
gacaacggcccagaaggcgtgaagggtaagcctggagctcgaggcctgccaggaccccgt
gggcagctggggcccgagggagatgagggacccatggggccaccaggggttcctggcttg
gagggtcaacctggcaggaaggggtttcctggaagacctggcccagatggcttgaagggc
gagccaggcgatgctggacggccggggcctgtgggcgagcagggacttctgggattcatt
ggtctggtcggggagccaggaatcatgggagaaaagggtgaccggggcatgatcggaccc
ccaggcgcgcccggacccaaggggtcgatgggccatcctggaaccccaggtgtggtggga
aacccaggagagcctggacctccgggtcctccaggatctcgaggcccatcgggcatgagg
ggagcaaagggacgccggggaccccgaggaccagacggaccagctggggagcaggggtct
aagggcctgaagggcccaccaggaccacagggcagactgggccagcccgggcagcagggc
gtggctggcgagcgagggcacttgggcacacgaggctttcctggcctcccgggtccttcc
ggtcccccaggtgccaagggcctcccaggagaaccgggccctcagggaccccaggggcca
attggccctcctggagagatgggacccaagggaccaccaggtgcagtgggagaaccgggc
cttcctggggaagctggcatgaagggtgaccttgggcctctgggcatccctggggagcag
ggcctcattgggcagcggggagagccaggcctcgagggtgacagtggtcctgcagggcct
gatgggctgaagggggacaggggtgaccccgggcctgacggtgaacgtggcgagaagggc
caagagggactgaagggcgaggacgggccccccggcccccctggcatcactggcgtccgg
ggtcctgaaggaaaaccagggaagcaaggcgagaagggccggatgggagccaagggtgcc
aagggctaccaaggtcagctgggtgagatgggcgtccctggagaccccggaccccctggc
accccaggccctaaagggtcccggggcagcctgggaccaacgggtgctccaggacggatg
ggggcccaaggagagccgggactggctggttacgacggacacaaaggcatcatgggaccc
ctcggacctcctggaccaaagggtgaaaagggggagcagggcgaggacggcaaggctgag
gggccccccggaccacctggagatcggggccccgtgggtgatcgaggagaccgtggcgaa
ccaggggaccctggataccctggacaggagggtgtacaaggcctccgtggaaatccaggc
cagcagggccaacccgggcatccgggaccccggggacggccgggccccaaaggatcgaaa
ggggaagagggaccaaagggaaagcagggcaaggctggggcgccaggacggagggggatc
cagggcctgcaggggctcccagggcctcggggcgtggtggggagacagggccccgagggt
gttgctggaccagatgggtttcctggccgcgacggtcaagcaggacagcagggggagcaa
ggagatgacggggaccctgggcccatgggccctgctgggaagagaggagatccaggtgtg
gctggcttgcctggagcacaggggcccccaggattcaagggtgaaagtgggttacctggg
cagatgggaccccctggcaagcgagggacagaaggcggcatggggcttcctgggaaccag
ggggagcctggatccaaaggccagccgggtgattctggcgagatgggattcccaggaatg
gctggcctcttcggacctaagggccccccaggagacattggtttcaaaggcatccagggc
cctcgggggcctcctggctcagtgggaaaggaaggtatcatcgggcccctaggaatcctg
ggaccttcgggacgccagggtccaaagggcgacaaaggcagccgcggggacttgggattg
caaggtccgaggggtcctcccggtcccagagggcagcccggcccaccgggtcctccagga
agccctatccactttcaacaagatgaccttggggcagctttccagacgtggatggacaca
agtggggcactgagagcagagggttacagccatccggaccggctggtgctggaccaggga
ggggagatctttaaaaccttacactacctcagcaacctcatccagagcattaagacgccc
ctgggcaccaaagagaaccccgcccgggtctgccgggacctcatggactgtgagcagaag
atggtggatggtacctactgggtggatccgaaccttggctgctcgtccgacaccattgaa
gtctcctgcaacttcacacatggtggacagacgtgtctcaagcccatcacggcctccaag
gtggagtttgccatcagccgggtccagatgaatttcctgcacctgctaagctctgaggtg
acacagcagatcaccatccactgccttaacatgaccgtgtggcaggagggcaccgggcgg
accccagctaagcaagctgtgcgcttccgggcctggaacgggcagatctttgaggccggg
ggtcagttcagtccagaagtgtccatggatggctgcaagatccaggatggccgctggcat
cagacactcttcaccttccggacccaggacccccagcagctgcccattgtcggtgtggac
aacctccctcctgcctcatcagggaagcagtaccgcctcgaagttggacctgcgtgcttc
ctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (11)   
   RefSeq(nuc) (5)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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