KEGG   Clostridium isatidis: BEN51_12560
Entry
BEN51_12560       CDS       T05663                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
cia  Clostridium isatidis
Pathway
cia03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BEN51_12560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cia03400]
    BEN51_12560
DNA repair and recombination proteins [BR:cia03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BEN51_12560
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BEN51_12560
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 AAA_29 RsgA_GTPase nSTAND1 AAA_21 ATPase AAA_22 AAA_33 AAA_18 DnaJ_CXXCXGXG APS_kinase AAA_25 AAA_15 cobW Viral_helicase1 DUF4350 NMDAR2_C
Other DBs
NCBI-ProteinID: ASW44255
UniProt: A0A343JFE7
Position
complement(2669444..2672269)
AA seq 941 aa
MKDKIIIKGAKVNNLKNISLEIPRDKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSS
YARQFLGQMDKPDVENIEGLSPAISIAQKTTSKNPRSTVGTITEIYDYLRLLYARVGKPY
CPKCKIPIEQQTVDQIVDKVMNFEERTKIQILAPVIRGKKGQHEKVLDKMKRSGYVRVRV
DGSIYDLTEEEINLDKNKKHNIEVVVDRIIVKEGVEARLTDSVEAALKLADGIVVINIIG
GEDITFSEKFACHECGMSIDEIEPRLFSFNAPYGKCDHCDGLGSLMELDEDLIIPNKELS
IMEGAIATWGEGRLKEDSWTYAILQALSHEYDIDLNKPVKELSREELDLILYGTNGKKLN
VTYIRDGVKTQYNYAYDGEINSLKRRYIETNSNDMKAYIEQFMGNNTCPKCKGARLNKEA
LAVLIGDKNIYEFTTLSIKEELEYINSIEFSEKDKKISEQIVREIKNRLTFLVDVGLDYL
DLARSSGTLSGGEAQRIRLATQIGSALMGVLYILDEPSIGLHQRDNDKLIATLKKLRDIG
NTVIVVEHDEDTMKAADYIVDIGPRAGEHGGKVVVAGTLEDVMNCEESITGQYLTGKKKV
EAPKERRKGNGNLIKIKGAKENNLKNINVSIPLGTLTTVTGVSGSGKSTLVNEILYKGLN
RIINKSKNPVGDYKEILGYENIDKIIDIDQSPIGRTPRSNPATYTGVFDIIRDLFSTTTE
AKMRGYSKGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCNGKRYNRETLEVKY
KGKNIADVLNMTVEEALEFFENIPRIKNKLETLYDVGLGYIRLGQPSTQLSGGEAQRIKL
AAELSKRGTGKTLYILDEPSTGLHIDDVNRLITILQRLVDAGNTVVVIEHNLDIIKCADY
IVDLGPEGGDKGGTIVATGTPEEIIEVDQSYTGKYLKKILR
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgaaagataaaataataataaagggagcaaaagtaaataatttaaaaaatatatcactt
gaaattccaagagacaaattagttgttttaactggcttatctggatcgggaaaatcctct
ttagctttcgatactttatatgcagaaggacagagaaggtatgtagagtcattatcttca
tatgcaagacagttccttgggcaaatggataagcctgatgtagaaaatatagaaggatta
tcccctgcaatatctattgctcaaaagactactagcaaaaatccaagatctactgttgga
actataacagaaatatatgattacttaagacttctatatgcaagggttggtaagccatat
tgtcctaaatgtaaaataccaattgaacaacaaactgtagatcaaattgtggataaagtc
atgaactttgaagaaagaaccaaaattcaaatattagctccagtaattagaggtaaaaaa
ggccaacatgagaaagttcttgataaaatgaagagaagcggatatgtaagagtaagggtt
gatggttctatttatgatttaactgaagaagaaataaatttagataagaataaaaaacat
aacattgaagttgtagttgacagaataattgttaaagaaggtgtagaagcaagattaaca
gattcagttgaagcagctttaaaacttgctgatggtatagtagttataaacataatagga
ggagaagatataacttttagtgagaagtttgcttgtcatgaatgtggtatgagcatagat
gaaatagaacctagactgttttcatttaatgccccatatggaaaatgtgatcattgtgat
ggacttgggtcattaatggaactagatgaagatttaataatcccaaataaagaattgagt
ataatggaaggtgctattgcaacttggggagaaggaagactaaaagaagactcttggact
tatgcaattttacaagccttaagtcatgaatatgacatagatttaaataaacctgttaag
gagttaagcagagaggaattagatttaattttatatggaactaatggtaagaaattaaat
gtaacatatattagagatggagttaaaactcaatataattatgcatatgatggtgaaata
aattcattaaagagaagatatatagagacaaattctaatgatatgaaagcatatattgag
caatttatgggaaataatacttgcccaaaatgtaagggtgcaagattaaataaggaagct
ttagctgttttaataggtgataaaaatatttatgaatttacaactctttcgattaaggag
gagcttgagtatataaattcaatagaattttctgaaaaggacaaaaaaatcagtgaacag
atagtaagagaaattaaaaatagacttacattcttggtggatgttggcttagattattta
gatttagcaagaagttcaggtaccttatcagggggagaagctcaaagaataagacttgca
acccaaataggttcagctctaatgggagtattgtatatattagatgaaccaagtatagga
cttcatcaaagagataacgataaacttatagcaactttaaagaaattaagagatatagga
aatacagttatagttgttgaacatgatgaagatacaatgaaagcagcagattatattgta
gatataggcccgagagcaggagaacatggtggcaaagtagttgttgcaggaactttagaa
gatgtaatgaactgtgaagaatcaataacaggccaatatttaactgggaagaaaaaggta
gaagctccaaaggaaagaagaaagggaaatggtaatttaataaaaatcaaaggagcaaag
gaaaacaacttaaaaaatataaatgtatcaatacctttgggaactttaacaacagttaca
ggtgtttctggttcaggaaagagtactttagttaatgaaattctctataagggattaaat
aggataataaataaaagtaaaaatccagttggagattataaagagatattaggatatgaa
aatatagataaaataatagatatagatcaaagtcctataggaagaactccaagatcaaac
ccagctacatatacaggagtgtttgatataataagagatttattctctacaacaactgaa
gctaaaatgagaggatatagtaaaggtagatttagctttaatgtaaaaggaggaagatgt
gaagcttgttctggagatggtataataaaaattgaaatgcaatttttatctgatgtttat
gttccttgtgaagtatgtaatggaaaaagatataatagagaaactttagaagtaaaatat
aaaggtaaaaatattgctgatgttttaaatatgacagtagaggaagcattggaattcttt
gaaaatataccaagaataaagaataagcttgaaacattatatgatgtaggccttggatat
ataagattaggtcagccttcgacacagttatcgggaggagaagctcaaagaataaaatta
gctgctgaattatcaaaaagaggtacaggaaaaactctttacattcttgatgaaccatca
acaggtcttcatatagatgatgtaaacagattaataactatacttcaaagattagtagat
gcaggtaatacagtagtagttatagagcataatttagatataataaaatgtgctgattat
atagtagacttaggaccagaaggcggagataagggtggaactatagttgcaactggaact
ccagaagaaataattgaggtggatcagtcttatacaggtaaatatcttaagaaaatccta
agataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (21)   
   Pfam (21)   
All databases (28)   

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