KEGG   Citrus x clementina (clementine): CICLE_v10030845mg
Entry
CICLE_v10030845mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10030845mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cic03041]
    CICLE_v10030845mg
Enzymes [BR:cic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CICLE_v10030845mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   Step II factors
    CICLE_v10030845mg
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N AAA_22 HA2_C DEAD AAA_19 AAA_30 AAA_16 ABC_tran nSTAND3 SLFN-g3_helicase T2SSE ATPase_2 NB-ARC AAA_29 FtsK_SpoIIIE nSTAND1 DAP3 AAA_33 Helicase_RecD PhoH AAA_18 MMR_HSR1 Flavi_DEAD NACHT
Other DBs
NCBI-GeneID: 18044621
NCBI-ProteinID: XP_006438086
UniProt: V4VFQ1
Position
Unknown
AA seq 704 aa
MANLPILQYEEKIVETVKQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV
AAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSV
IILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGK
LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIQSL
DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY
VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPE
IQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIG
RTMAELPLEPSLSRMLMEANEYGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPLEL
PDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGS
LDVRANHRWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELK
TDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILKKLEKIDINKLSGGAGQMEEA
SEKKLTDMPETEVNAAVVANDHKSRIQAARERFLARKPNKLSKI
NT seq 2115 nt   +upstreamnt  +downstreamnt
atggcgaatcttccgattctccaatatgaagaaaagatagtagaaacggtgaagcagaat
ccagtggtggtggttatcggagagacggggtccggcaagagcacgcagctctctcagata
ctccaccgacatggctacaccaaatccggaattattggcgttactcagcctcgccgagtc
gctgccgtatccgttgccagacgagttgcacaggaacttggtgttcggcttggggaggaa
gtaggttatgcaatacgatttgaggatagaacatcggaaagaacacttattaaatacctt
actgatggagttcttcttcgagaaattctgtctaatccagatcttagtccgtattcagtt
atcatattagatgaagcccatgagaggagtctcaacacggacatattgctgggtcttgtg
aaacgcttggttaatttgcgagcatcaaaattaaagattttgatcacgtcagcaactctt
gatggtgaaaaagtttccaagttcttttcaaattgccccacattgaatgtccctggaaag
ttgtatcctgtggagatattgcacagcaaggagcgtcctacaagctatcttgagtctgct
ttgaaaacagcaattgatatacatgttcgagaaccagaaggtgacgtgttgatattcatg
actggacaggatgatatagagaagctagtttcaaagttagaagataaaattcaaagcctg
gatgaagggtcctgcatggatgctgtaatccttccccttcatggttccttgccacccgaa
atgcaggtgcgtgtatttagtcctccacctccaaattgtaggcgatttattgtttccaca
aacatcgctgaaacttccttgaccgttgatggtgtagtgtatgttattgattgtggttac
gtgaagcagcggcaatacaacccatcgtcaggcatgtattcccttgatgtagttcaaatt
agcaaagtgcaagctaatcagcgtgttggacgagctggaaggacgcgccctggaaagtgc
taccggttgtacccatccactgtttaccacgatgaatttcttgatgtaacagtacctgaa
atacagcgatcttctctcgctggcagtgttctttatctgaaatcattggacctctctgat
attaatgttctcaagtttgattttctcgatcccccttcctctgagtcgttagaagatgca
ctaaagcaattatatctgattgatgctattgatgaaaatggatccattacaagtattgga
agaacaatggctgagcttccattagaaccttcactttcacggatgttaatggaggcaaat
gagtatggttgcttatctcaggctttgactgtagctgccatgttatcagcagagaccaca
ttgcttcctggtcgaagcaagagtactgagaaaaagcggaagcacactcccttggaactt
cctgatggttctggttggggtgatcacattcagttgctacagatttacgagtgttgggat
gaatgtgattatgatgtcaattgggtcaaggataatggcctgcaggtgcgaggaatgatg
tttgtcaaagacattcggaaacagctatgtcagataatgcagaaaatagctaagggatca
ttagatgtacgagccaatcatagatggaaagaaagccgacaggattataggaaattgagg
aaggctttatgtgtaggatatgcaaaccagcttgctgaaagaatgattcatcacaacggc
tatcgaactctaggttttaagcctcaactggttcaggtacacccatcatctgagcttaaa
acagatgaagaaggactgctcccgaattatgttgtttaccatgagctcattgctacctct
cgtccatatatgcgcaatgtgtgtgctgtggagatgcaatgggtcatgcccattttaaag
aagcttgaaaaaatagatattaacaaactgagcggtggagctggtcagatggaagaggca
tctgagaaaaaactcacagatatgccagaaacagaggtcaatgctgctgtggttgctaat
gatcacaaaagtagaattcaggcagccagggagcgttttcttgctcgaaaaccaaataaa
ttaagtaaaatataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (26)   
   Pfam (26)   
All databases (43)   

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