KEGG   Ciona intestinalis (yellow sea squirt): 778784
Entry
778784            CDS       T01056                                 
Symbol
trh
Name
(RefSeq) transcription factor protein
  KO
K09098  neuronal PAS domain-containing protein 1/3
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cin03000]
    778784 (trh)
Transcription factors [BR:cin03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    778784 (trh)
SSDB
Motif
Pfam: PAS_3 PAS PAS_11 PAS_9 PAS_4 HLH
Other DBs
NCBI-GeneID: 778784
NCBI-ProteinID: NP_001071842
Ensembl: ENSCING00000001010
UniProt: Q4H2N9
AA seq 753 aa
MQCHNAGPTVLSLNASVLKYLSSKQKFFEQLEMLKNQQIRNDAAESKAGEELYQTQEKSN
VRLTCVKKEKSRDAARSRRGKENFEFYELAKLLPVPSETSSQLDKASIVRLTMSYLQLQK
FMLARKSTEPASKPDYFCRAAQQSSFMENCMGSFILQSLDGFIFVLNKDGRFLFVSDTVS
IYLGLAQVDLIGTSIFNYTHPADHPELVDHLKNRSNSHHNITRNFHSSDKNEELEADTSS
CSFFIRMKSTLTRRGSNVKSIGYKVVHMTGCLSSKIHRRLKVEDASSDDETPTNLDAMLG
LTGIAQVLPPPTLIDIKLDQPMFVVRIDASLRVNYCEDRIEQLTDYTMDQVKGRTLYHFI
HSSDLTKIRRCHAAILSKGQVVTPYYRWLLKSGKHLWLQSCVTIVVDKHLSSDDDMFIWI
SYVLGEDISCATSNSTTTKNLCKTKLVNGILEKLEDTSMIDRKLKKVHSLPTRMYSSESS
EKLNNEPTNLCINRANSTKRSSSVSDDLECKKQKPSLKSMIPEPTEAKPLKLTKHDDSLD
SSSKLWYNPPNREITDHSDLPPGVKVGHPGGTLMTVQPSPTVVRHHYPFGIDPNLLNSNP
LLAKMLTAGCAGYDSLFSQSDALIFAAPSMSFLTPVLAPVPHLVPTTNICPSSVATIIEE
LRKDPLRKKSPPNKVVLPNNTQVKNSPKENESIASSAGCSQTSRTSSLQNTVLSLPNNTV
FLSPIPGYQHHTTNPLLLGSIKFPQQINALNSL
NT seq 2262 nt   +upstreamnt  +downstreamnt
atgcagtgccacaacgctggccctacggtgctaagcttaaatgcaagcgtgctaaaatat
ctgagttcaaagcaaaagtttttcgaacaactggaaatgcttaaaaatcagcagattaga
aatgatgcagctgagtcaaaggctggggaagaactgtatcaaacacaggagaaatctaat
gttcgactcacatgcgtgaagaaggagaagtcccgtgatgctgcacgctctcgaagagga
aaagaaaattttgagttttatgagcttgccaaactacttccagtaccttctgaaacctca
agtcagctcgacaaagcatctattgttcgtctcacaatgagttatcttcaactgcagaag
ttcatgttggctcggaagtccactgagcctgctagcaaacctgattacttttgtcgtgcc
gctcaacaatcttcattcatggaaaactgcatgggaagcttcatactgcaaagccttgat
ggtttcatattcgtgctgaacaaagacggaaggtttttattcgtgtctgacactgtatct
atatacttaggccttgcacaggttgacttgataggaacaagcatattcaactatacccac
cctgcagatcatcctgaacttgtagaccacctaaagaacagatcaaacagccaccataac
ataacacgcaatttccactcttctgataaaaatgaagagttggaagcggatacatcatct
tgttcatttttcattcgaatgaaatccacgcttacaagaagaggaagtaatgtgaaatca
atcggatacaaggttgttcatatgactggttgtctcagcagcaaaatacatcggcgacta
aaagtcgaagacgcttcaagcgatgacgagaccccaaccaatcttgatgcaatgctgggg
ctaacggggatcgcccaggtgcttcctcctcccacgcttattgatataaaattagaccaa
ccgatgttcgtcgtaagaatcgacgcttcactgcgtgtcaactactgcgaagacagaatt
gagcaactgacagattacacaatggaccaagtaaaaggacgaacattatatcacttcatt
cattcaagtgatcttacaaagataagaagatgtcatgctgcaattctttcaaaaggccaa
gtagtgacaccgtattatcggtggctgcttaaatctggtaaacatctctggttgcagtca
tgcgttacgatagtggtcgacaaacatctttcttcagatgatgatatgtttatttggata
agctatgttcttggtgaagatatatcgtgtgcaacctctaactcaacaacaacaaaaaat
ctttgtaaaacgaagcttgtaaatgggattttggaaaagctggaagatacttctatgatt
gacaggaagctaaaaaaggtccattcacttccaaccagaatgtacagtagtgaatctagt
gagaaattaaataacgaaccaaccaatctgtgcattaacagagcaaattctacaaagaga
agttccagtgtctcagatgatttggaatgcaagaaacaaaaaccttcactcaaatccatg
atccctgaacccactgaagcgaaaccattaaaattaacgaagcatgacgactcccttgac
tcaagctcgaagctctggtacaacccacccaaccgtgaaataactgaccacagcgattta
ccccctggggtaaaagtgggtcacccgggaggtaccttaatgacagtacagcccagcccc
acagtagtccgacaccattacccatttggaattgacccaaacttgctcaactctaacccg
ctgctcgcgaaaatgctcacagcaggttgtgctggttacgactcattattctcgcaaagc
gacgctctaatcttcgcagctccgtcaatgagtttccttactcctgtcctagctccagtt
ccgcatctggtcccaacgacaaacatatgcccttcatctgtagctactataattgaagag
ctccgaaaagaccctctacgtaaaaaaagcccgccaaacaaagtcgtcctaccaaacaat
acccaagtcaaaaactctccaaaagaaaacgaatcaatcgcatcatcagctggttgctcg
caaacctctcgaactagctcgttacaaaacactgtcctatccctaccaaacaacacggtt
tttttaagtcctatccctggctaccaacaccacaccactaacccattattacttggttca
ataaaattccctcaacaaataaacgcgctaaactcgctctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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