KEGG   Citrus sinensis (Valencia orange): 102617856
Entry
102617856         CDS       T02983                                 
Name
(RefSeq) DNA mismatch repair protein MSH7
  KO
K08737  DNA mismatch repair protein MSH6
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    102617856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102617856
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     102617856
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II AAA_29
Other DBs
NCBI-GeneID: 102617856
NCBI-ProteinID: XP_006475707
Position
1:complement(join(5752342..5752815,5753178..5753305,5753655..5753751,5753825..5754238,5754688..5754882,5755548..5755825,5755915..5756041,5756133..5756332,5757432..5757476,5757583..5757616,5757717..5757848,5758457..5758552,5759015..5759081,5759425..5759480,5759597..5759692,5760103..5760646,5761067..5761401))
AA seq 1105 aa
MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFMTKQRNPVGDSSGQPTVSATEDSSLE
IRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSS
TVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMH
RVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPS
KIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELY
ELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK
ARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAAL
RVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA
VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL
RNGDILPYKVYRDCLRMDGQTLVNLEIFNNNADSGSSGTLFKYLDSCVTSSGKRLLRSWI
CHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP
LIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFL
TQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVT
ASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS
DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR
IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR
LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL
QVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCN
SDDDDAYDTLFCLWHELKNSYQLHN
NT seq 3318 nt   +upstreamnt  +downstreamnt
atgcagcgtcaacaatcgatccactccttctttcagaaatgctcgccggcgaacaaatct
ggcgccgcagacatgtcaggcgcccggaaagactccaattttatgacaaagcagcggaat
ccagtcggtgactcctccggtcaacctacagtttctgctacggaggactcctctctggaa
atcagaggaaccgacactccaccggaaaaagtgccacgtcagattctaccgtcgggcttt
aaggcgaatgaggggaccagtggaggttcttcactgttttcgagcattatgcataagttt
gtgaaggttgatgcaagacaaaacgcaaataaaaggaatgaacagcatggaaattcctct
actgtttgctcagtgtttggtaaaactggtgatctggaagcatcatctcaacagggaaca
gcttctctatattctgaaaaagacaatgttttcaattgtaatggcttggccaaccaagga
tgtgtttcatgtactgaaatgaatgaagatgtttctggtccagatacaccgggcatgcat
cgtgttgttcctcgtctaaagcggattttagaagataatctcaacattggggacaagaag
aactcttcattgctggattctagtaaaagaatgagacttcttcaggattccgtggctggg
gttaagaactgtgaggaagaagctgatacaaccagcaagtttgaatggcttgatccttct
aaaattagggatgccaacagaagaaggcctgatgatcccctttatgacaagaggacactt
tatataccacctgaagctttgaagaaaatgtccgcatctcaaaagcaatactggaatgtc
aaatcccaatatatggatgttttgcttttctttaaagtggggaaattctacgagctctat
gaactggatgctgaaattggtcacaaagagcttgattggaagattacattaagcggtgta
gggaaatgtcgacaggttggtatctccgagagtgggattgatgatgctgttgaaaaacta
gttgctcggggatataaagttggacggattgagcagttggagacatctgaacaagcaaaa
gcaagacatacaaactctgtaatttctagaaaattagtgaatgttgtcacaccgtcaacc
acagtagatggtacgattggccctgatgctgttcatcttcttgctataaaagaggggaac
tgtgggccagataatggttctgttgtctatggatttgcttttgttgattgtgctgctctg
agggtctgggttggcaccatcaatgatgatgcttcatgtgctgctttgggggctttattg
atgcaagtatcacctaaagaagtaatatatgaaaatagagggctttgcaaagaagctcag
aaagcgctgagaaagttctcagcaggttctgcagctttggaactcactccggctatggca
gttactgattttttggatgcttctgaagttaaaaaattggttcagttgaacggttacttc
aatgggtcttcaagtccatggagtaaggcactcgaaaacgtaatgcaacatgatatcggg
ttctctgctctaggtggacttataagtcatttatccaggttgatgttggatgatgtttta
cgaaatggagatatattaccttacaaagtttatagagattgccttagaatggatggacag
acactggtaaatcttgagatatttaataacaatgctgacagtggttcatcaggtacattg
ttcaagtatcttgatagctgtgtgacatcatctggtaagcggcttttgcggagttggatc
tgccatccactaaaagatgttgaaggcattaataacaggctggacgttgttgaatatcta
atgaaaaattcagaagttgtgatggttgttgctcagtatctgcgcaagctccctgacttg
gagaggctgctgggaagggtgaaagctagagttcaggcatcatcgtgtattgtattgccc
ttaataggcaagaaagtattgaaacagcaagtgaaagtatttgggtctcttgtgaaagga
cttaggattgcaatggatttattaatgttaatgcacaaggaagggcatataattccgtca
ttatctagaatttttaaaccgccaatattcgatggtagtgatgggctggataaattcctt
actcagtttgaagcagcaattgatagcgacttccctgattaccagaaccatgatgtaaca
gatttggatgcagaaacactgtcaattctgattgagttattcattgagaaagctagtcaa
tggtctgaagttattcatgctattagttgtatcgatgtattaagatcttttgctgttact
gcgagcatgtcatctggtgctatgcatagacctcttattttgcctcaatcaaaaaatccg
gctgtgaggcaagacaatggaggacctgtacttaaaattaaaggattgtggcatccgttt
gcacttggagagaatggaggactaccggtcccaaatgacattcttcttggtgaagattca
gatgactgtcttccccgtaccttgctattgactggacctaatatgggtggaaaatcaaca
cttctgcgtgccacatgtttagctgtaatactggctcagctgggctgttttgttccttgc
gagatgtgtgttctctctcttgcggataccatttttacacggcttggtgccactgataga
atcatgacaggagagagtacatttcttgttgagtgcacagagacggcatcagttcttcag
aaagccactcaagattctctggtaattcttgatgaactgggtcgaggaacaagcactttt
gatggatatgccattgcctacgctgtattccgccaacttgttgaaaggatcaattgtcgg
ttgctatttgcaacacattaccatccactcacaaaagaatttgcttctcatccgcatgtt
actctacaacatatggcttgtgctttcaagtcaaactctgaaaactattcgaaaggtgat
caagagctggtttttctctaccgccttacttccggagcatgcccagagagctatgggttg
caagtggctgtaatggctggggttccacaaaaggtggttgaggcagcatcacatgctgct
ctagcaatgaaaaaatcaataggagaaagtttcaagtcgagtgaacagagatcagagttc
tcaagtctccatgaagagtggttgaagaccattgtaaatgtctcaagggttgattgtaat
tccgatgatgatgatgcttatgacacattgttttgtttgtggcatgagctaaagaattca
tatcagttgcacaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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