KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100396246
Entry
100396246         CDS       T03264                                 
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2 isoform X2
  KO
K10755  replication factor C subunit 2/4
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03030  DNA replication
cjc03410  Base excision repair
cjc03420  Nucleotide excision repair
cjc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100396246 (RFC2)
   03410 Base excision repair
    100396246 (RFC2)
   03420 Nucleotide excision repair
    100396246 (RFC2)
   03430 Mismatch repair
    100396246 (RFC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjc03032]
    100396246 (RFC2)
   03036 Chromosome and associated proteins [BR:cjc03036]
    100396246 (RFC2)
   03400 DNA repair and recombination proteins [BR:cjc03400]
    100396246 (RFC2)
DNA replication proteins [BR:cjc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100396246 (RFC2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    100396246 (RFC2)
Chromosome and associated proteins [BR:cjc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100396246 (RFC2)
DNA repair and recombination proteins [BR:cjc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100396246 (RFC2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    100396246 (RFC2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 Viral_helicase1 AAA_16 AAA_14 Mg_chelatase AAA_11 Rad17 AAA_24 RuvB_N AAA_18 AAA_19 nSTAND3 AAA_assoc_2 MipZ AAA_5 AAA_28 AAA_25 AAA_23 AAA_30 T2SSE NTPase_1 ABC_tran MeaB RNA_helicase FtsK_SpoIIIE SLFN-g3_helicase DUF815
Other DBs
NCBI-GeneID: 100396246
NCBI-ProteinID: XP_002743970
Ensembl: ENSCJAG00000003985
Position
2:7525813..7551942
AA seq 352 aa
MEVEAVGDGDGEREAQDPAPASSKAPGSCGHYELPWVEKYRPVKLNEIVGNEDTVSRLEV
FAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKVKM
FAQHKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ
SRCAVLRYTKLTDAQILTRLMSVIEKERVPHTDDGLEAIIFTAQGDMRQALNNLQSTFSG
FGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRV
CKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
NT seq 1059 nt   +upstreamnt  +downstreamnt
atggaggtggaggctgtaggtgatggcgacggggagcgggaggcccaggaccctgcccct
gcctccagcaaggcccctgggagctgcgggcactatgagctaccgtgggttgaaaaatac
aggccagtaaagctgaatgaaattgtcgggaatgaagacaccgtgagcaggctagaggtc
tttgcaagggaagggaatgtgcccaacatcatcattgcgggcccgccgggaactggcaag
accacaagcattctgtgcttggcacgagctctgctgggcccagcactcaaggatgctgtg
ttggaactcaatgcttcaaatgacaggggcattgacgttgtgaggaataaagttaaaatg
tttgctcaacacaaagtcacccttcccaaaggccgacataagatcatcattctggatgaa
gccgacagcatgactgacggagcccagcaagccttgaggagaaccatggaaatctactcc
aaaaccacgcgctttgctcttgcttgtaacgcttcggataagatcattgagcccattcag
tcccgctgcgctgtcctccgctacacgaagctgactgatgcccagatcctcaccaggctg
atgagtgttatcgagaaggagagggtgccccacactgatgacggcctggaagccatcatc
ttcacggcgcagggagacatgaggcaggcgctgaacaacctgcagtccaccttctcagga
tttggcttcattaacagtgagaatgttttcaaggtctgtgacgagccccacccactgctg
gtgaaggagatgatccagcactgtgtgaacgccaacatcgatgaagcttacaagattctc
gctcacctgtggcatctgggctactcaccagaagatatcattggcaacatctttcgagtg
tgtaaaactttccaaatggcagaatacctgaaactggagtttatcaaggaaattggatac
actcatatgaaaatcgcagagggagtgaactcccttttgcagatggccggcctcctggcc
aggctgtgtcagaagacaatggccccggtggccagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (20)   
   RefSeq(nuc) (2)   
   GenBank (9)   
   EMBL (9)   
Protein domain (30)   
   Pfam (30)   
All databases (66)   

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