KEGG   Clostridium ljungdahlii: CLJU_c03120
Entry
CLJU_c03120       CDS       T01276                                 
Symbol
uvrA1
Name
(GenBank) excinuclease ABC, subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
clj  Clostridium ljungdahlii
Pathway
clj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLJU_c03120 (uvrA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clj03400]
    CLJU_c03120 (uvrA1)
DNA repair and recombination proteins [BR:clj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CLJU_c03120 (uvrA1)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CLJU_c03120 (uvrA1)
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_29 RsgA_GTPase AAA_16 nSTAND1 nSTAND3 AAA_22 APS_kinase DnaJ_CXXCXGXG AAA_18 NACHT NMDAR2_C Viral_helicase1 ATPase cobW SLFN-g3_helicase Zn_Tnp_IS91 AAA_23 RKP_N
Other DBs
NCBI-ProteinID: ADK13396
UniProt: D8GLK0
Position
318536..321358
AA seq 940 aa
MKDSIVIKGAKVHNLKNISLTIPRDKLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLGQMDKPDVEYIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARIGVPH
CPKCGKEITQQTVDQMVDKIMEMPERTKIQILSPVIKGKKGEHIKVLESIVKNGFVRARI
DGEIVDLQDEEIKLEKNKKHTIEIVVDRLIIKSEIRSRLADSIETSLKLSDGILIVNILG
GEDILFSEKFACPECGISIGEITPRTFSFNSPFGKCDTCDGLGTLLEIDENLVIPDRKKS
ILEGAITAWGEGSLKEGSWTFSILKALSSTFKFKLDTPIEKLDPKVVDILLYGLRGGKIR
VKYRKENRMMEFNHSYEGIVNTLKRRYMETNSDYIKKEIENYMSDNPCPKCKGARLKPEV
LAITVGEKNIFELCNMSIKDELKFFKEIQLSEKDKIISDQVLKEISGRLQFLIDVGLDYL
TLSRTAGTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLISTLKHLRDIG
NTLIVVEHDEDTMRQSDFIVDIGPGAGEHGGEVVAAGPISDIIKCDRSITGQYLSGKKKI
EIPEHRRECSGKYIKVIGASENNLKNIDVSFPLGIFTCVTGVSGSGKSTLVNEILYKALH
KELNNSKDRPGHYKNILGTENVDKIINIDQSPIGRTPRSNPATYTGVFDIIREVFASTSE
SKMRGYKPGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLQVKY
KNRNIDDVLNMTVEEALKFFENIPRIKNKLQTLMDVGLGYIKLGQPSTQLSGGEAQRIKL
AHELSKRSTGKTMYILDEPTTGLHIDDVSKLINILQRIVDVGNTIVVIEHNLDVIKCADY
IIDLGPEGGEKGGNILCMGTPEQISENKGSYTGQYLKKML
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgaaagatagcatagtaataaaaggtgctaaagttcacaatttaaaaaatataagtttg
actataccaagagataagctaatagtttttactgggctttcaggttcgggaaaatcttca
ctagcatttgatactctttatgcagaaggtcagagaagatacgttgaatcattatctgca
tatgcaagacaattcttgggccagatggataaaccagatgtagaatacattgaaggctta
tcacctgctatatctatagatcagaaaactacaagtagaaatccacgttctacagtagga
acagttacagaaatatatgattatttgaggttattgtatgcacgtataggagtgccccat
tgtccaaagtgcggcaaggaaataacccagcagacagtggatcaaatggtagataaaatt
atggaaatgccagagagaactaagatacagatactttcacctgtaataaagggaaaaaaa
ggagaacacataaaggtactggaaagcatagttaaaaatgggtttgtaagagctagaatt
gatggagaaatagtagatcttcaagatgaagagataaaattagagaaaaataaaaagcat
actattgaaatagtagtagataggttgataattaaaagtgaaataaggagcagacttgcg
gattctatagaaacctccttaaaattgtccgatgggatacttattgtaaatatattgggt
ggagaggacatacttttcagtgagaaatttgcatgtccggaatgtggtataagtatagga
gagattactcctagaactttttcttttaattcaccttttggaaaatgtgatacttgtgat
gggcttggtaccttgcttgagatagatgagaatctagtaatacctgatagaaaaaagagt
atattagaaggtgctattacagcctggggagaaggaagtttaaaggaaggttcctggact
tttagtatactgaaggctctttcgagtacgtttaaatttaaattggatacacctatagaa
aaattagatcctaaagtagtagacatattactttatggattaagaggcggaaaaataaga
gttaaatacagaaaagaaaacagaatgatggaatttaatcattcttatgaaggaatagtc
aatactttgaagagaaggtatatggagacaaattccgactatataaaaaaagaaatagaa
aattatatgagtgataatccatgtccaaaatgtaagggcgccagattaaaacctgaagta
ttagcaattacagtaggagaaaaaaacatatttgagctgtgtaacatgtctataaaagat
gaattgaaattttttaaggagatacagctttcggaaaaagataagattataagtgaccaa
gtattgaaagaaataagtggtaggttgcaatttttaatagatgtaggattggactatttg
acattgtccagaactgccggaactttatccggaggagagtcccaaagaataagacttgca
actcaaataggttcaagtttggttggagtgctttatatattggatgagccaagtataggg
cttcaccaaagagataatgacagacttatatctactttgaagcatttaagagatattgga
aatacattgatagtagtagaacatgatgaggatacaatgagacagtcggattttatagta
gatataggaccaggagcaggagaacatggcggagaagtagtagctgcagggcctatttcg
gatattataaaatgtgatagatcaataacaggacagtatttaagcggaaagaaaaaaata
gaaatacctgaacatagaagggaatgtagcggaaaatatataaaagtaataggtgcttca
gagaataatttgaaaaatatagatgtttcttttcccttaggaatatttacttgtgttacc
ggtgtatctggatctggaaaaagtactttagtaaatgaaatattatacaaagcactacat
aaggaattaaacaattcaaaagataggccgggacattataaaaatattttgggaacagaa
aatgtagataaaattataaatatagaccaaagtcctataggaaggactccaagatccaat
cctgcaacttatacaggagtatttgatataataagggaagtgtttgcaagtacttctgaa
tccaagatgagaggatataaacctggacgattcagctttaatgtaaaaggaggaagatgc
gaggcttgcagcggagatggaataataaaaatagaaatgcaatttttatcagacgtatac
gtgccttgtgaagtttgtaagggaaaaagatataatagagaaacacttcaagtaaagtat
aaaaatagaaatattgatgatgtattaaatatgactgtagaagaagcattaaaattcttt
gaaaatataccaagaataaaaaataagctgcaaactcttatggatgtagggctaggatat
atcaaattaggtcaaccttccacacaattgtctggtggagaggcacagagaataaagctt
gcccatgaattatctaaaagaagtactgggaagacaatgtatatacttgatgaacctact
acaggacttcacatagatgatgtaagtaaacttataaatatacttcagagaattgtagat
gtaggtaatacaattgtggttatagaacataacttagatgttataaagtgtgcggattat
atcattgatcttggacctgaaggtggagaaaagggaggaaacattctctgcatgggtact
ccagaacaaatatctgaaaataagggttcttacacaggacaatacttaaaaaagatgtta
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (30)   

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