KEGG   Celeribacter marinus: IMCC12053_127
Entry
IMCC12053_127     CDS       T04098                                 
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cmar  Celeribacter marinus
Pathway
cmar02020  Two-component system
cmar02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cmar00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    IMCC12053_127
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    IMCC12053_127
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmar03021]
    IMCC12053_127
Transcription machinery [BR:cmar03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     IMCC12053_127
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_3 LacI
Other DBs
NCBI-ProteinID: ALI54077
UniProt: A0A0N7HI30
Position
complement(112874..114346)
AA seq 490 aa
MKFTASQTVSQKQSIVITAQLQQAIKLLQMNNFELGQFLEEQSVDNPFLDVESATLHESA
STKEYDTPVAASVTPTDIKVGEAAEDTPLNNEALENTFESSLLDLGNKTSSGMAHQDWDM
IASTVEERKPSLYAYVCGEIDQLLAEPKERMIGYALAEAIEPSGWLGQPVEEIALMLRVS
EALVCQVLIKLQTLEPAGLFARSLSECLLLQAREQDNDTTDFERLLAHLPMLAKGDMKAL
KKASGLSLERLRTLISLLRSFNPKPGSVFEGAAEPIRAPDLIVQASADGWKVDLNRSTMP
SIHINRALAKAALKSLRSDDDKKFTTERVADANWLRRAIEQRNSTTLAIGAEIVRRQQAF
LEQGIGALRPLVLRDVAEAIDVHESTVSRVTSGLMMATPQGTFRLKALFSVGLQGNGDDG
AEAASAIKYKIKKLIETEPPSAPYSDDKIVDFMAKEGVKLARRTVAKYRDMQNIPSSFQR
RRAASVAGLA
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgaaattcacggcatcacagacagtcagtcagaaacagtcgatcgtcatcactgcgcaa
ttgcagcaagcaataaagttgttgcagatgaacaattttgaacttggtcagtttttggaa
gaacagtccgtcgacaacccgtttttggatgttgaaagcgcaaccctacatgaaagcgcc
tcaacgaaagaatatgacacacctgttgcagcatcggtgacgcccaccgacattaaagtt
ggcgaagccgccgaagacacgccgctcaacaacgaggcgctcgaaaacacatttgaatcc
agcctgctcgatttgggcaataaaaccagcagcggcatggcgcatcaagattgggatatg
attgcttccacggttgaagagcggaaaccttctttatacgcgtatgtgtgcggcgaaatt
gaccagctgctcgccgagccaaaagaacggatgatcggttatgcgttagccgaagccata
gagccctcaggttggttagggcaacccgttgaggagattgccctgatgttgcgcgtttct
gaagcgttggtatgccaagtgcttataaagttgcagacacttgagcccgcaggattgttc
gcgcgctcattgagtgaatgtctcttgctgcaagcacgtgaacaagacaacgacacaaca
gattttgaacgccttcttgcccatttgcccatgctggccaaaggcgacatgaaagcctta
aagaaagcgtctggtctttctttggagaggttgcgtacattgattagcctgctccgcagc
tttaatccaaaaccaggaagcgtctttgagggggccgctgaacccatacgcgcgccagac
ctgattgttcaagcgagcgctgacggttggaaagtagacttaaaccgcagcacaatgcca
agcattcacatcaatcgggcccttgctaaagcagctctgaaatccctgcgaagcgacgat
gataaaaaattcaccacggagcgggtcgccgacgccaattggttgcggcgcgccattgag
caacgcaattcaacaacactggccattggcgcagagattgtccgccgccaacaagccttt
ctagagcaaggcataggtgccttacgcccattggttttgcgcgatgtggcagaggcaatc
gatgtgcacgagagcaccgtaagccgtgtgacatcaggcttgatgatggcgacaccacag
ggcacatttcgcttgaaagctttgtttagcgttgggctgcaaggcaatggcgacgatggc
gctgaagcagcttcagcgataaagtacaaaattaagaaattgatagaaaccgaaccaccc
tcagccccttatagcgacgataaaatcgtagacttcatggcgaaagaaggcgtcaagctt
gcccggcgtactgtggccaaataccgcgatatgcaaaacatcccgtcgtctttccaacgt
cgccgcgcagcttcagtggcagggctcgcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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