KEGG   Callorhinchus milii (elephant shark): 103172020Help
Entry
103172020         CDS       T03088                                 

Gene name
dhx8
Definition
(RefSeq) DEAH-box helicase 8
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103172020 (dhx8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmk03041]
    103172020 (dhx8)
Enzymes [BR:cmk01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     103172020 (dhx8)
Spliceosome [BR:cmk03041]
 Complex C
  Other components
   Step II factors
    103172020 (dhx8)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: OB_NTP_bind HA2 S1 Helicase_C DEAD AAA_22 T2SSE AAA_19 PRP38_assoc Sigma54_activ_2 AAA_30 AAA_16 ABC_tran Flavi_DEAD Presenilin PhoH AAA_7
Motif
Other DBs
NCBI-GeneID: 103172020
NCBI-ProteinID: XP_007883013
Position
Un
AA seq 1196 aa AA seqDB search
RSFNVEGVVRRAPGVTKLPCFSPFPAEFIISLAEKHNTFETFKRMLLKNGAEFTDSLISN
LLRLIQTMRPPPKPLTSSKAAETTKPKSEKEKMKELFPVLCMPDNPTIKTLLDPDDLKVA
ADALKELEALMPSKEDIRKSSKHSSVDKGKRRKRSRSRDRKRRRHSRSRSRSRDRTRSRT
GRRSRSRSRSGSRNRDHKERERERERERERERGVRLGGEKAGEKWKERHVDRPPPEEPSV
GDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVL
SFTGSKTSLSMKDVDQESGEDLNPNRRRNVGGETSEETTMRNPDRPSNLSLVNTPEVEDD
MLERKRLTKISDPEKWEIKQMIAANVISKEEYPDFDEETGILPKVDDEEDEDLEIELVEE
EPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAQREAEMDSIPMG
LNKHWVDPLPDVDGRQIAANMRGIGMMPQDIPEWKKHAFGGNKASYGRKTQMSILEQRES
LPIYRLKEQLVQAVHDNQVLIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAM
SVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPNLSQYAIIML
DEAHERTIHTDVLFGLLKKTVKKRPDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPV
EVLYTKEPETDYLDSSLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSMGPDV
PELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKV
YNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTN
LASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFP
LEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQAEGDHLT
LLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQ
KAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMRE
VTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq 3591 nt NT seq  +upstreamnt  +downstreamnt
agaagttttaacgtggaaggagttgtgcgcagggcgccaggagtaacaaagctgccttgt
ttctctccgttcccagcggagttcatcatcagtctcgcggagaagcacaacacgttcgag
actttcaagcggatgctcctgaaaaatggggccgagtttacggattcgctcatcagcaat
ttgttgcgtctgatacagaccatgaggccacctcccaagcccttgacgtccagcaaagct
gctgaaaccaccaaaccgaagtcggaaaaggaaaagatgaaggagcttttcccggtgctc
tgtatgcccgacaaccccacgatcaagacgctgctggatccagatgatttgaaagtggca
gccgatgccctgaaggaactcgaggccctgatgccgtcgaaggaagacattagaaagagc
agcaagcacagctcggttgacaaaggcaagaggaggaaacgcagccggagtagagaccga
aagcgtcgacggcattccagatcccgatcacgttcccgggaccggaccaggagcagaacc
ggcaggaggtccaggagccgaagtcgaagcgggagccggaacagagaccacaaggagaga
gagagggaaagggagagggagagggagagagagaggggcgtccgcctcgggggagagaag
gccggagagaagtggaaggaacgtcacgtagacagacccccgccagaggagccctcggtg
ggcgacatctacaacggcaaagtcaccagcatcatgcagttcggatgctttgtgcagctg
gaagggctcaggaaacgatgggagggtttggtgcacatctccgagctcaggagagaggga
cgtgtggccaacgtggcggatgtcgttagcaaaggccagagagtgaaagtcaaggtgttg
tctttcactggatccaagaccagcctcagtatgaaggatgtggatcaggaaagcggagag
gacctgaatccaaaccgccgcaggaacgtggggggagagacgagcgaggagaccaccatg
aggaacccggacagacccagtaacctgtcgctggtcaacacgcccgaggtggaggatgac
atgctggagcgcaagcgactgacaaagatctcggacccggagaagtgggagatcaaacag
atgatcgcggcgaacgtcatctccaaagaggagtaccctgacttcgacgaagagacgggg
attcttcccaaggtggatgacgaggaagacgaggacctcgagatcgagctggtggaagag
gagcctccgttcctcaggggccacaccaaacagagcatggacatgagtcctgtcaaaata
gtcaagaatcccgacggctccctatcccaggccgccatgatgcaaagtgcgttggcgaag
gagaggcgggagatgaagcaggctcagcgggaggcggaaatggactccatccccatggga
ctgaacaagcactgggtcgatccactacccgatgttgacgggcgacagattgcggccaac
atgcgaggcatcgggatgatgccccaggacatccccgagtggaagaagcacgcgttcggg
gggaacaaagcctcttacggacgcaaaacccagatgtccatcctggaacagagagaaagc
ttgcccatctacaggctgaaagagcagctggtccaggcggttcacgacaaccaggtgctg
atcgtgatcggggagacgggctccggtaaaaccacgcagatcacccagtacctggcggag
gccggctacaccacccgggggaagattggctgcacgcagccccggcgtgtggctgccatg
tccgtagccaagcgtgtatccgaggagtacggctgctgcttggggcaggaggttggctac
accatccgattcgaagattgcaccagccccgagacggtgatcaagtacatgacggacggg
atgttgctacgagagtgtcttatcgaccccaacctctcgcagtacgccatcatcatgctg
gacgaggcccacgagaggacaatccacactgacgtcctcttcgggctgttgaagaagacc
gtcaagaaacggcccgatatgaagttgatcgtgacgtcagccacgctggacgcggtcaag
ttctcacagtatttctacgaggctccgatcttcaccatccccgggaggacgtacccggtg
gaggttctttacacgaaggaacccgagacggattacctggactccagtctgatcacagtc
atgcagatccatctcacagagccaccgggagatatcctggttttcctgacgggtcaggag
gagattgacacggcgtgcgagatcctgtacgagcgaatgaagtccatggggccggacgtg
cccgagttgattatcctgcctgtgtactcagccttgccgagcgagatgcaaaccagaata
ttcgacccagcgcctcccggcagcaggaaggttgtgatcgccaccaacattgcggaaacc
tcactgaccatcgacggcatttactatgtggtggaccccgggttcgtcaagcagaaagtc
tacaactccaaaaccggcatcgatcaactcgtggtcactccaatatcacaggcacaagcc
aagcagcgagccgggcgcgcaggcaggacagggcccggcaagtgctacaggctgtacacc
gagcgagcctacagagacgagatgctcaccactaatgtgcccgagattcagaggaccaat
ctggccagcaccgtgctgtcccttaaggctatgggcatcaatgacctgctatcgtttgat
ttcatggacgcccctcccatggagacgctcatcacggccatggagcagctgtacactctg
ggggcgctcgacgacgagggtttgctgacgaggctcggacgcaggatggcggagtttccc
ctggagccgatgctgtgtaaaatgctgatcatgtccgtgcacctcggctgtagcgaggaa
atgctgactatcgtttctatgctgtctgtacagaacgtcttctatcgacccaaagataaa
caagccctggccgatcagaagaaggccaagttccaccaggcggaaggcgaccacctcacc
ttgctcgccgtctacaactcgtggaagaacaacaagttctccaacccctggtgctacgag
aacttcatccaggctcgctccctccgtagggctcaggacatccgcaagcagatgctcggg
atcatggacaggcacaaactggacgtggtgtcgtgcggcaaagccacggtgcgggtccag
aaagccatctgcagcggcttcttccgcaacgcggccaagaaagacccccaggagggttac
cggaccctgatcgaccaacaggtggtgtacatccacccttccagcgccctcttcaaccgc
cagccagaatgggttgtgtatcacgagctggtcctgaccaccaaggagtacatgcgagag
gtcaccaccattgacccccgttggctggtggagttcgctccggccttcttcaaggtctcc
gaccccaccaagctcagcaagcagaagaagcagcagcggctggagcctctgtacaaccgc
tacgaggagcccaacgcctggagaatctctcgcgcgttcaggcgccggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (79)   

Download RDF
DBGET integrated database retrieval system