KEGG   Callorhinchus milii (elephant shark): 103172020
Entry
103172020         CDS       T03088                                 
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103172020 (dhx8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmk03041]
    103172020 (dhx8)
Enzymes [BR:cmk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103172020 (dhx8)
Spliceosome [BR:cmk03041]
 Complex C
  Other components
   Step II factors
    103172020 (dhx8)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 Helicase_C HA2_N DEAD GIPC1_GH2 AAA_22 AAA_19 PRP38_assoc nSTAND3 AAA_16 TsaE Sigma54_activ_2 Flavi_DEAD PhoH ABC_tran Cas3-like_C_2
Other DBs
NCBI-GeneID: 103172020
NCBI-ProteinID: XP_042199156
Position
Unknown
AA seq 1207 aa
MAEAAGEELRKLEYLSLVSKVCTELDNHLGINDKDLAEFIISLAEKHNTFETFKRMLLKN
GAEFTDSLISNLLRLIQTMRPPPKPLTSSKAAETTKPKSEKEKMKELFPVLCMPDNPTIK
TLLDPDDLKVAADALKELEALMPSKEDIRKSSKHSSVDKGKRRKRSRSRDRKRRRHSRSR
SRSRDRTRSRTGRRSRSRSRSGSRNRDHKERERERERERERERGVRLGGEKAGEKWKERH
VDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVV
SKGQRVKVKVLSFTGSKTSLSMKDVDQESGEDLNPNRRRNVGGETSEETTMRNPDRPSNL
SLVNTPEVEDDMLERKRLTKISDPEKWEIKQMIAANVISKEEYPDFDEETGILPKVDDEE
DEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAQ
REAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPQDIPEWKKHAFGGNKASYGRK
TQMSILEQRESLPIYRLKEQLVQAVHDNQVLIVIGETGSGKTTQITQYLAEAGYTTRGKI
GCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLID
PNLSQYAIIMLDEAHERTIHTDVLFGLLKKTVKKRPDMKLIVTSATLDAVKFSQYFYEAP
IFTIPGRTYPVEVLYTKEPETDYLDSSLITVMQIHLTEPPGDILVFLTGQEEIDTACEIL
YERMKSMGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYY
VVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEML
TTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLL
TRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKA
KFHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDV
VSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHE
LVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRI
SRAFRRR
NT seq 3624 nt   +upstreamnt  +downstreamnt
atggcggaggccgccggggaggagctccggaagctcgagtatctgtccctggtgtccaag
gtctgcactgagctggacaaccatctgggcatcaatgacaaggacctggcggagttcatc
atcagtctcgcggagaagcacaacacgttcgagactttcaagcggatgctcctgaaaaat
ggggccgagtttacggattcgctcatcagcaatttgttgcgtctgatacagaccatgagg
ccacctcccaagcccttgacgtccagcaaagctgctgaaaccaccaaaccgaagtcggaa
aaggaaaagatgaaggagcttttcccggtgctctgtatgcccgacaaccccacgatcaag
acgctgctggatccagatgatttgaaagtggcagccgatgccctgaaggaactcgaggcc
ctgatgccgtcgaaggaagacattagaaagagcagcaagcacagctcggttgacaaaggc
aagaggaggaaacgcagccggagtagagaccgaaagcgtcgacggcattccagatcccga
tcacgttcccgggaccggaccaggagcagaaccggcaggaggtccaggagccgaagtcga
agcgggagccggaacagagaccacaaggagagagagagggaaagggagagggagagggag
agagagaggggcgtccgcctcgggggagagaaggccggagagaagtggaaggaacgtcac
gtagacagacccccgccagaggagccctcggtgggcgacatctacaacggcaaagtcacc
agcatcatgcagttcggatgctttgtgcagctggaagggctcaggaaacgatgggagggt
ttggtgcacatctccgagctcaggagagagggacgtgtggccaacgtggcggatgtcgtt
agcaaaggccagagagtgaaagtcaaggtgttgtctttcactggatccaaaaccagcctc
agtatgaaggatgtggatcaggaaagcggagaggacctgaatccaaaccgccgcaggaac
gtggggggagagacgagcgaggagaccaccatgaggaacccggacagacccagtaacctg
tcgctggtcaacacgcccgaggtggaggatgacatgctggagcgcaagcgactgacaaag
atctcggacccggagaagtgggagatcaaacagatgatcgcggcgaacgtcatctccaaa
gaggagtaccctgacttcgacgaagagacggggattcttcccaaggtggatgacgaggaa
gacgaggacctcgagatcgagctggtggaagaggagcctccgttcctcaggggccacacc
aaacagagcatggacatgagtcctgtcaaaatagtcaagaatcccgacggctccctatcc
caggccgccatgatgcaaagtgcgttggcgaaggagaggcgggagatgaagcaggctcag
cgggaggcggaaatggactccatccccatgggactgaacaagcactgggtcgatccacta
cccgatgttgacgggcgacagattgcggccaacatgcgaggcatcgggatgatgccccag
gacatccccgagtggaagaagcacgcgttcggggggaacaaagcctcttacggacgcaaa
acccagatgtccatcctggaacagagagaaagcttgcccatctacaggctgaaagagcag
ctggtccaggcggttcacgacaaccaggtgctgatcgtgatcggggagacgggctccggt
aaaaccacgcagatcacccagtacctggcggaggccggctacaccacccgggggaagatt
ggctgcacgcagccccggcgtgtggctgccatgtccgtagccaagcgtgtatccgaggag
tacggctgctgcttggggcaggaggttggctacaccatccgattcgaagattgcaccagc
cccgagacggtgatcaagtacatgacggacgggatgttgctacgagagtgtcttatcgac
cccaacctctcgcagtacgccatcatcatgctggacgaggcccacgagaggacaatccac
actgacgtcctcttcgggctgttgaagaagaccgtcaagaaacggcccgatatgaagttg
atcgtgacgtcagccacgctggacgcggtcaagttctcacagtatttctacgaggctccg
atcttcaccatccccgggaggacgtacccggtggaggttctttacacgaaggaacccgag
acggattacctggactccagtctgatcacagtcatgcagatccatctcacagagccaccg
ggagatatcctggttttcctgacgggtcaggaggagattgacacggcgtgcgagatcctg
tacgagcgaatgaagtccatggggccggacgtgcccgagttgattatcctgcctgtgtac
tcagccttgccgagcgagatgcaaaccagaatattcgacccagcgcctcccggcagcagg
aaggttgtgatcgccaccaacattgcggaaacctcactgaccatcgacggcatttactat
gtggtggaccccgggttcgtcaagcagaaagtctacaactccaaaaccggcatcgatcaa
ctagtggtcactccaatatcacaggcacaagccaagcagcgagccgggcgcgcaggcagg
acagggcccggcaagtgctacaggctgtacaccgagcgagcctacagagacgagatgctc
accactaatgtgcccgagattcagaggaccaatctggccagcaccgtgctgtcccttaag
gctatgggcatcaatgacctgctatcgtttgatttcatggacgcccctcccatggagacg
ctcatcacggccatggagcagctgtacactctgggggcgctcgacgacgagggtttgctg
acgaggctcggacgcaggatggcggagtttcccctggagccgatgctgtgtaaaatgctg
atcatgtccgtgcacctcggctgtagcgaggaaatgctgactatcgtttctatgctgtct
gtacagaacgtcttctatcgacccaaggataaacaagccctggccgatcagaagaaggcc
aagttccaccaggcggaaggcgaccacctcaccttgctcgccgtctacaactcgtggaag
aacaacaagttctccaacccctggtgctacgagaacttcatccaggctcgctccctccgt
agggctcaggacatccgcaagcagatgctcgggatcatggacaggcacaaactggacgtg
gtgtcgtgcggcaaagccacggtgcgggtccagaaagccatctgcagcggcttcttccgc
aacgcggccaagaaagacccccaggagggttaccggaccctgatcgaccaacaggtggtg
tacatccacccttccagcgccctcttcaaccgccagccagaatgggttgtgtatcacgag
ctggtcctgaccaccaaggagtacatgcgagaggtcaccaccattgacccccgttggctg
gtggagttcgctccggccttcttcaaggtctccgaccccaccaagctcagcaagcagaag
aagcagcagcggctggagcctctgtacaaccgctacgaggagcccaacgcctggagaatc
tctcgcgcgttcaggcgccggtga

  All links  
Gene (51)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (73)   

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