KEGG   Cucumis melo (muskmelon): 103486004
Entry
103486004         CDS       T03195                                 
Name
(RefSeq) uncharacterized protein LOC103486004 isoform X1
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103486004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103486004
   03400 DNA repair and recombination proteins [BR:cmo03400]
    103486004
Enzymes [BR:cmo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     103486004
Messenger RNA biogenesis [BR:cmo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     103486004
DNA repair and recombination proteins [BR:cmo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      103486004
SSDB
Motif
Pfam: DEAD RQC Helicase_C HTH_40 RecQ_Zn_bind HRDC ResIII NPP
Other DBs
NCBI-GeneID: 103486004
NCBI-ProteinID: XP_008442015
UniProt: A0A1S3B4Q2
Position
8:complement(24391674..24412094)
AA seq 882 aa
MEAILKSCFGFSAFRPYQKEIVQDILLGKDCLVVMSTGSGKSLCYQVPPLVVGKTGIVVS
PLLSLMQDQVMALKQKGIKSEYLGSTQTDSTVQAKAESGQYNILFMTPEKACSVPMSFWS
KLKKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLPGLPFVALTATATEKVRSDII
NSLKMKDPQVTIGSFDRTNLFYGVKSFNRGPLFMNELVLDISKYVASGGSTIIYCTTIKD
VEQIFKALEEAGISVGIYHGQMDKKSRAESHRLFIRDELQVMVATIAFGMGIDKPNIRQV
IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGESQTENQRRAIMESL
MAAQQYCSIATCRRNFLLGYFGEKSHSDKCGNCDNCIDSKKVRDMSKEAFLLLACIQSCR
GKWGVNMPVDILRGSRAKKILDAQFDKLPLHGLGREYSSNWWKALASQLISNGYLTETIR
DVYRTIGISAKGEQFLNSARQDCQPPLVLPVTSDLIGENEDDSALTEAGKMDNLATLKSG
LSEAEEKLFQLLLEERMKLARSAGTAPYAVCGDQTVKRIALTRPSTKARLANIDGVNQHL
LKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFEAWK
MWHEDGLSIQKIANFPGRSAPIKETTVCGYIVDAVQEGYEIDWTKFCNEIGLTCRIFSNI
QSAVTKVGSAEKLKAIKDELPEEINYAHIKACLVMQSCGMSPEGLDRKTDEPMIGASLLS
GSPTSIKKKEEPCVIETPSNGEEEISVSLKRQKVRESEEERQVPVKATESLLIEWLKNND
GVTLDNMMEQFKGSEEESLVALLNSLEGDFVIYKKNNIYKLM
NT seq 2649 nt   +upstreamnt  +downstreamnt
atggaggccattctaaagagttgctttggattctcggcgtttaggccgtatcagaaagaa
attgttcaggacattcttcttgggaaggattgcttggtggttatgtccactggaagtggg
aaatccttatgttatcaggtaccgcctttggttgttggaaagactggcatagttgttagc
ccccttctatcattaatgcaggatcaggtaatggctttaaaacaaaaagggatcaagtct
gagtaccttggaagtactcaaactgattcgacagttcaagccaaggcagagagtggtcaa
tataatatattgttcatgacaccagaaaaggcatgctctgtacccatgagtttttggtca
aaattaaagaaggcaggaatttgtttgtttgccgttgatgaagcacattgcatttcagag
tgggggcatgattttagggtagaatacaaacagctggacaaacttcgtgatgttctacca
ggtcttccatttgttgccctgactgccactgcaactgaaaaggtccggagtgacattatt
aattctttgaagatgaaagacccacaagttaccattggttcatttgatcgaacaaatctt
ttttatggagtcaagtcttttaatcgtggtccattattcatgaacgagctggtgcttgat
atctctaagtacgtagcctctggtggttcgactatcatttactgcacgacaattaaagat
gttgagcagatattcaaggcacttgaagaagcagggattagtgttggaatctatcacggt
caaatggacaaaaaatcacgtgcagaatcccacagactatttataagggatgaactgcaa
gtcatggttgccactattgcttttggtatgggcattgacaaaccaaacataagacaagtc
atacattatggctgcccaaagagtctagaatcttattaccaggaaagtgggagatgtggt
agagatggtattgcttctgtttgctggctttattacacgagaagtgattttgctaaagca
gacttctactgtggtgaatcacaaactgaaaaccaaagaagagctattatggagtcattg
atggctgcacaacagtattgctctatagcaacttgcagaagaaacttcttgctcggttat
tttggggaaaaatctcattctgataaatgtggaaattgtgataactgcatagactcaaaa
aaggtgcgtgacatgtcaaaagaagcatttcttctactggcctgcatccaatcatgcagg
ggtaaatggggagtgaacatgcctgtggatattcttcgtggatctagagcaaaaaagata
cttgatgctcagtttgataagcttccacttcatggacttggaagagaatactcatcaaat
tggtggaaagcactagctagtcaactaatttctaatggctatttgacagagaccatacgc
gatgtttacagaaccataggtatcagtgcaaaaggggaacagtttctcaattctgccaga
caggactgccaaccacctctagttttgcctgtgacgagtgatttgattggtgagaatgag
gatgacagtgcattaactgaagctgggaaaatggataacttggccactttgaagagtgga
ctttcagaggctgaggaaaaactctttcaattgcttttagaagagagaatgaagcttgct
agaagtgctggaactgccccttatgccgtatgcggtgatcaaacagttaaaagaattgca
ctgactagaccatctactaaggcaagattagcgaatattgatggtgtcaaccagcatctt
ctaaaaatgcacggagatctaattcttgaagcagtcaagcttctatcacaacaagtcagt
ctatcactggatggcgaatatagagaagaaggaaatggacaaggtactacaacgagaaaa
ctctatacagaaccaaaccaacgacgaccattggctccagcaaagtttgaagcttggaaa
atgtggcatgaagatggtctctcgatacagaaaattgctaacttccctggtaggtcggca
cctatcaaagaaactactgtttgcgggtatattgttgatgcagtccaggaaggatatgaa
atcgactggaccaaattttgtaatgagataggacttacatgtcggatattctccaacatt
caatctgctgtcacaaaagttggatctgctgagaagttgaaggcgataaaagatgaacta
ccagaagaaataaattatgcacacatcaaggcttgtctggtaatgcaaagttgtggaatg
tccccggaaggcctggatagaaaaactgacgaaccaatgattggtgcgtcattgctttca
ggaagtccaacttccattaagaagaaagaagagccttgtgtaattgaaacaccatcaaat
ggagaagaggaaatttctgtctcgttaaagcgccagaaagttcgtgaatcggaggaagaa
cgtcaagttccggtaaaagcaaccgagagcttgctaatagagtggctgaagaacaatgat
ggggtaacacttgacaatatgatggagcagtttaaaggatctgaagaagaatctctagtt
gctttgcttaattcccttgaaggtgattttgtgatatataaaaagaacaatatctataag
ctcatgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system