KEGG   Cucurbita moschata (crookneck pumpkin): 111458384
Entry
111458384         CDS       T05248                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111458384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111458384
Enzymes [BR:cmos01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111458384
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     111458384
SSDB
Motif
Pfam: OB_NTP_bind HA2_C DEAD dsrm HA2_N Helicase_C AAA_22 nSTAND3 ATPase AAA_19 NACHT Dicer_dimer T2SSE Myosin_head ABC_tran
Other DBs
NCBI-GeneID: 111458384
NCBI-ProteinID: XP_022956782
UniProt: A0A6J1GXB4
Position
Unknown
AA seq 1071 aa
MKDRTPSSNGAVYVPPHLRLRSVVTRSDRSSAVSAVDCKLREAPASLLDSGTIPPPCLDS
RSQELLSMGKSRFNSVHYDFACDDGAPVDSWGFSPPANIDLWKRKLALLLRDKEKQELVS
REKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLL
RRVDEHLGEFLSQKSRFKCFQDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKVLWR
RSLHLRDQQHAWQSSLDGSEMLEFRKNLPAYKEKDALLTTISQNQVIIISGETGCGKTTQ
VPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG
RDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRL
ILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEK
TWKMSKQAPRKRKTQIASTVQRLIFTEPDKGVRKVVLATNIAETSITINDVVFVLDCGKA
KETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRSVFDSFFEYQLPEIL
RTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRY
LTMLPMEPKLGKMLIIGSIFNCLDPILSIVAGFSVRDPFLTPLEKKDAAEAAKSQFSRDH
SDHLAIIRAYEGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDEHS
NTYNAWSLDERLIRAVICCGLYPGVCSIVHNEKSFSLKTMEDGQVLLYSNSVNARESRIP
YPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDQEGHLKMLGGFLEFFMKPDVA
ETYQKLRMELEELIQMKLLNPTMDLHSHHELLSAIRLLISEDQCEGRFTFGRQILQQPSK
KSTLAAAPNSVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNHFQATVEFNGL
QIMGQPCTNKKNAEKDAAAKALEWLMGGNQIGHDYINQMSMMLKRSKKDHN
NT seq 3216 nt   +upstreamnt  +downstreamnt
atgaaggaccgtactccttcctccaatggcgccgtttacgtccctcctcacctccgtctc
cgttccgtcgttactcgttctgatcgttcctctgctgtttctgctgttgactgcaagctt
agggaggctccagcctcgctgctcgattccggaaccattcctccgccttgccttgattct
cgatctcaagaactcctctcgatggggaaatcgcgttttaattccgtgcactatgatttt
gcctgcgacgatggggctcccgtggatagctggggtttttcacctcctgctaacattgat
ttgtggaaaaggaagttagcactacttttacgtgacaaggagaagcaagagttagtttca
agggagaaaaaagatagacatgattttgagcaaatagctgctttggcaagtagaatggga
ctttttagccatctatatgccaaagttgctgtttttagtaaggtcccgttgccgaactac
agatttgatttggatgatcggcgtccacagagggaggtttctttgcctcctgggttgctt
agaagagttgatgaacatctgggagaatttctctctcaaaagtctcggtttaaatgtttt
caagataactctgtctctagatcaagcagcagtggtagcattgctacagatgaagggctt
tttgagcaacctgagctacaagcatctagtaaggctgtgatggaaaaagttctttggcgg
agaagtttgcatctgcgtgatcaacagcatgcttggcagtcatctctagacggaagcgaa
atgctggaattccggaaaaatctccctgcttacaaggagaaggatgcattattgaccaca
atatcacagaatcaggttattattatttcaggtgaaactggttgtggcaagactacgcaa
gttccccaattcattttggaatcagaaatagaatcactccgtggtgctgtttgcagcatc
atatgtacacagccaagacgaatatctgctatgtctgtctctgagagagttgcttctgaa
agaggcgagaagttgggtgaatctgttggttataaagtgcggctggagggtatgaaaggg
agggatactcatcttctcttttgcaccaccggcatcttgttgagaagactgctggttgat
agaaatttgaaaggcgtaactcatgttattgttgatgaaattcatgagcgtggaatgaat
gaagattttctgcttattgtcctgaaagatctccttcctcgtcgaccagaattgaggttg
attctaatgagcgcaactttagatgcagaacttttctcatcctactttggtggggctcaa
ataatttacattccgggattcacacaccctgtcaaaactcattttctggaggatattcta
gaaatgacgggttacagattaactccatacaatcaaatagatgattatggtccagagaag
acttggaaaatgagcaaacaagcaccaagaaagaggaaaacccagattgcctctactgtt
cagaggttaatatttactgaacctgacaaaggagtgaggaaggtagtgcttgcaacaaat
attgctgagacaagtatcacgataaatgatgttgtgtttgttctggattgtggaaaggca
aaagaaacatcgtatgatgctttaaacaacactccttgtttgcttccctcttggatatcc
aaggtttctgctcaacaaagaagaggaagggctggtcgtgttcaacctggagaatgttat
catctataccctaggtctgtgtttgattcttttttcgagtatcagctacccgaaattttg
agaacacctttacagtccctctgcttgcaaataaaaagcctaaagcttggaagtatatca
gagtttctatctagggctttgcagtcgccagagctactagcggttcagaatgctattgaa
tatttaaagatcattggagcatttgatgagagtgaaaatcttactgtcttaggtcgttat
ttgactatgctcccaatggaaccaaaattgggaaagatgttgataataggttctatcttc
aattgtttggatccaattttgtccattgttgctggcttcagtgtgagagacccttttcta
acaccacttgagaagaaggacgctgcagaggctgcgaagtcccaattttcacgagatcat
agtgatcaccttgccattatccgggcttatgagggatggaaagaagctgagaggaacttt
ggtggttacgacttctgttggaagaacttcctttctgtacaatcgatgaaggctattgat
tcattaaggaaggagtttttctctttgcttagagatactggtttagttgatgagcactcg
aacacgtacaatgcttggagtctagatgaacgactcatacgtgcagttatttgctgtggc
ctctatcctggagtttgctccattgtgcataatgagaagtcattttctctcaaaactatg
gaggatggccaggtacttctctattcgaactcagtcaatgctcgagagtcgaggattcca
tatccatggatagttttcaatgagaagataaaagtgaactccattttccttcgagattca
acagctatctctgactcaatgctgcttctctttggtggaagcatctcaaaaggtgatcaa
gagggacacttgaaaatgttgggcggttttttggaattttttatgaaacctgatgtagca
gagacatatcagaaattaagaatggaacttgaagagcttatacagatgaagctactaaat
cctacgatggacttgcactcccaccatgagctcctatctgctatacgcttgcttatttca
gaagaccagtgtgaaggtcgatttacttttggccggcagatccttcagcaaccctccaag
aaatcaactctggccgcggcaccaaattctgtttcaagaattgaaagtggacctggtggt
gacaattctaagagtcagctgcagactttactcacgagggctggatatgctgcacccatc
tataagacaaagcaattgaagaataatcatttccaagcaaccgttgaatttaatggactg
caaattatgggacaaccttgtaccaacaaaaagaatgcagaaaaggatgcagcagctaag
gctctcgagtggttaatgggtggaaatcagattgggcacgactatatcaaccaaatgtct
atgatgctaaaaagaagcaagaaggatcataactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (15)   
   Pfam (15)   
All databases (33)   

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