KEGG COMPOUND: C00315

COMPOUND: C00315

Entry

C00315                      Compound

Name

Spermidine;
N-(3-Aminopropyl)-1,4-butane-diamine

Formula

C7H19N3

Exact mass

145.1579

Mol weight

145.25

Structure

Reaction

R01914 R01915 R01917 R01918 R01919 R01920 R02869 R03899
R05329 R07300 R07477 R08983 R09076 R09077 R09081 R09531
R10347 R11154 R11159 R11199 R11200 R12596 R12598 R12599

Pathway

map00330

Arginine and proline metabolism

map00410

beta-Alanine metabolism

map00480

Glutathione metabolism

map00940

Phenylpropanoid biosynthesis

map01053

Biosynthesis of siderophore group nonribosomal peptides

map01100

Metabolic pathways

map01110

Biosynthesis of secondary metabolites

map02010

ABC transporters

map04976

Bile secretion

Module

M00133

Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine

Enzyme

1.5.3.13        1.5.3.14        1.5.3.16        1.5.3.17
1.5.99.6        2.3.1.248       2.3.1.249       2.5.1.16
2.5.1.22        2.5.1.44        2.5.1.45        2.5.1.46
2.5.1.79        2.5.1.128       3.5.1.48        3.5.1.78
3.5.1.-         3.5.3.24        4.1.1.96        6.3.1.8
6.3.1.9         6.3.2.-

Other DBs

CAS:

124-20-9

PubChem:

3609

ChEBI:

16610

KNApSAcK:

C00001431

PDB-CCD:

SPD[PDBj] SR0[PDBj]

3DMET:

B01214

NIKKAJI:

J10.054D

KCF data

ATOM        10
            1   C1b C    23.8990  -23.5201
            2   N1b N    25.1010  -22.8199
            3   C1b C    22.6854  -22.8199
            4   C1b C    26.3146  -23.5201
            5   C1b C    21.4717  -23.5201
            6   C1b C    27.5283  -22.8199
            7   C1b C    20.2581  -22.8199
            8   C1b C    28.7419  -23.5201
            9   N1a N    19.0445  -23.5201
            10  N1a N    29.9555  -22.8199
BOND        9
            1     1   2 1
            2     1   3 1
            3     2   4 1
            4     3   5 1
            5     4   6 1
            6     5   7 1
            7     6   8 1
            8     7   9 1
            9     8  10 1

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