KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111777491
Entry
111777491         CDS       T05351                                 
Name
(RefSeq) exosome complex component RRP41-like isoform X1
  KO
K12587  exosome complex component MTR3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111777491
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111777491
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111777491
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 111777491
NCBI-ProteinID: XP_023512894
Position
LG16:6192252..6196032
AA seq 258 aa
MAKKATPATSTYSPSPTTRKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS
AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
FGKNLLIDPTLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
VTIMRSCLKESAATVSEE
NT seq 777 nt   +upstreamnt  +downstreamnt
atggccaaaaaagcgacaccagctacgtctacgtattctccctctcctaccacccgcaaa
accaggccacccatcttcagaagcgacgatgtcgactgggttcgccctgatggccgaagc
ttccaccagtgccgtcctgctttttttaggactggtgctgtaaatgctgcttcaggatct
gcttatgcggagtttgggaacaccaaggtcattgtttctgtattcggccctagagaaagt
aagaaagcaatgatgtatagtgatattggccggctcaattgtagcgtcagttatacaaca
ttttccactccagttcgtggacagggatcggaaaacaaggagttctcctcaatgctacat
aaagctttggaaggggcaataatattggagacattccccaagacaactgtggatgtattt
gccttggtgttggaatctggaggcagcgatcttcctgttgtaatatcatgtgctagtctt
gctcttgccgatgctgggattatgctttatgatcttgttgcctcagtttctgtgagctgc
tttggtaagaatcttcttattgatcctacattggaagaggaaaactaccaagatggaagt
ctgatgataacttgtatgccatctcgttacgaagtcactcagctcactattacaggcgaa
tggtcaaccgctaaaattaatgagggtatgcagctttgtcttgatgcttcgtgtaagctc
gtgacgatcatgcggtcatgcttgaaggaatctgccgccacggtttcagaggaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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