KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111777748
Entry
111777748         CDS       T05351                                 
Name
(RefSeq) protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03250  Viral life cycle - HIV-1
cpep04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    111777748
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    111777748
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cpep04131]
    111777748
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111777748
Membrane trafficking [BR:cpep04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    111777748
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    111777748
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 AAA_5 RuvB_N AAA_14 AAA_22 TIP49 DUF815 AAA_2 AAA_17 AAA_33 RNA_helicase IstB_IS21 AAA_24 AAA_18 AAA_25 Parvo_NS1 Mg_chelatase NACHT nSTAND3 AAA_7 AAA_28 PhoH Torsin bpMoxR USP8_dimer
Other DBs
NCBI-GeneID: 111777748
NCBI-ProteinID: XP_023513231
Position
LG16:7862106..7866194
AA seq 433 aa
MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFT
EYLRRAEEIRAVLDDGGPGPASNGDAAVATKPKTKPKDGDGGDGEDPEQTKLRAGLNSAI
IREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLA
KAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFEMARDSAPSIIFIDEIDSLCGQRGE
GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDAK
ARQHMFKVHLGDTPHNLTEADFESLARRTDGFSGSDVSVCVKDVLFEPVRKTQDAMFFIK
TPDGMWVPCGPKQQGAVQITMQELAAKGLASKILPPPITRTDFDKVLARQRPTVSKSDLE
IHEKFTKEFGEEG
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgtatagcaatttcaaggagcaagctatcgagtacgtgaagcaggcggtacatgaagat
aatgctggcaattacgcgaaagccttccccctgtatatgaacgccttggagtacttcaaa
actcatttgaagtatgagaagaatcctaagatcaaggaagccatcacccagaaattcacc
gagtatttgcgccgtgctgaggagatacgtgcggttctcgatgatggcggtcctggtccg
gcttccaatggggatgcagcggttgcgactaagcccaaaacgaagcccaaggatggcgat
ggaggagatggagaggatccagaacagacgaagctgcgggccggtcttaattccgcgatt
attagggagaagccggatgtcaagtggaacgatgtcgctggtttagagagcgccaagcag
gcattgcaagaggcggtaatattacccgttaagttcccgcagttctttactggcaagagg
cgaccatggcgagctttcttgttatatgggcctcctggaactggaaaatcatacttggca
aaggctgttgcgacggaggccgactcaacatttttcagcatttcttcttcggaccttgtc
tcaaaatggatgggtgaaagtgaaaagctagtttcaaatctttttgaaatggctcgtgat
agtgctccatctatcatctttattgatgaaatagattcgctgtgtggtcaacgaggtgaa
ggtaatgaaagtgaagcttcaagacgcattaagacagaacttcttgtgcaaatgcagggt
gtaggacacaatgatcaaaaggttcttgtcctcgctgcaacaaatactccctatgctttg
gatcaggccattcgtcgacgattcgacaagcggatatacatccctcttcccgacgcaaaa
gccaggcagcacatgttcaaagtgcatctgggggatacaccacataatttaacggaagca
gattttgaaagcttagcccgcaggacagatggtttctctggctcagatgtttctgtttgt
gtgaaggacgtgctcttcgagcctgttcgtaaaacacaagatgctatgttcttcatcaag
actcctgatggtatgtgggtaccttgtggaccaaagcaacaaggcgctgtccaaattacc
atgcaagagttggcagccaaaggactcgcctcaaagattcttcctcctccaattacaaga
acggacttcgacaaggttctagctagacaaaggcctacggtgagtaaatctgatctggag
attcatgaaaagtttacgaaggagtttggggaggaaggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (29)   
   Pfam (29)   
All databases (43)   

Download RDF
DBGET integrated database retrieval system