KEGG T05351: 111779984

Cucurbita pepo subsp. pepo (vegetable marrow): 111779984

Entry

111779984         CDS       T05351

Name

(RefSeq) dicer-like protein 4 isoform X1

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

cpep Cucurbita pepo subsp. pepo (vegetable marrow)

Brite

KEGG Orthology (KO) [BR:cpep00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpep03036]
    111779984
Chromosome and associated proteins [BR:cpep03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    111779984
   microRNA pathway
    RISC loading complex
     111779984

SSDB

Motif

Pfam:

Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer DEAD Helicase_C ResIII DND1_DSRM dsrm PAZ IstB_IS21

Other DBs

NCBI-GeneID:

111779984

NCBI-ProteinID:

XP_023515970

Position

LG18:6021604..6034828

AA seq 1654 aa
MPDGETNSTTADSVNFQPTSSASVERFMGLSPVDDQGAGSSIRTSGKDPRRIARKYQLEL
CEKALEENIIVYLGTGCGKTHIAILLIYEMGHLIRRPQKGICVFLAPTVALVQQQAKVIE
DSIDFKVKVYCGGSKCLNSHYDWEREMEEYEVFVMTPEILLRNLHHCYIKMEFVELLIFD
ECHHAQVKSDHSYAEIMRVFYKANEHKRPRIFGMTASPVVGKGACNQQNLSKSINSLEKL
LDAKVYSVEDREELEAFVSSPRFKIYYYGPVATGSSSSFMTYCCPLEDVKCQCIVALGQM
KGEHEGLLATKKLLCRMHKNIIFCLENLGVWGALQASKILLSEDNSERSELIEAAEANPK
HDSISDRYLNQAAEIFASGCKIDAGVSDMLNVDILKEPCFSKKLLRLIGILSSFRHRPNM
KCIIFVNRIVIARSLSYILQNLKFLAYWKCDFLVGVHSKLRSMSRKTMNHILTKFRSGEL
NLLIATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVDSGNEKELG
LIDEFHKDEKRMNREISSRSSIETFDGHEESIYRVVSTGASVTSGRSISLLHEYCSKLPH
DTYFDPKPKFFYCDDLGGTICHAILPSNAPIPQIVSRPQPAGVAAKKDACLKAVEELHKL
GALSDYLLPMRDNANEGELELDSDSDSSEDETSRRELHEMISPAAFKESWTGFGYVILYC
YHIKFTPNPEDRIYKEFGLFVKAPLPQEAVRMDLELHLAHGRSVKVNLMPSRVVELLENE
ITQAECFQEMFLKVILDRSEFVHDYIPLRNNVSRSISSTSYLLLPVIVHDNEGSVFIDWK
VIRRCLSSQIFQNHACSIVKETASSDTHLMLYDGRRRSSDIENSLVYVPYKREFFFVTNI
VRRKNGYSQYKDSGSLSHFEHLKTRFGIHLKYPEQPLLCAKPLFSLHNLLHNRKQKDSEA
PYLEEYFIDIAPELCQLKITGFSKDIGSSISLLPSIMHRLENLLVAIELKCMLAAAFPAG
AEVTANRILEALTTEKCQERISLERLEILGDSFLKFAVARYLFLAHDKFDEGELTRRRSY
LVKNINLFKLATRKNLQVYIRDQPFEPSQFYLLGRPCPRICNEETRNDIHSHDNATNNAK
ASETKCSKGHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIKVEFEASQVTNAL
VASKAYVLLADTINISSLQSSLGHKFLHKGLLLQALVHPTYHKHGGGCYQRLEFLGDAVL
DYLIMSYLYSAYPKLKPGLLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSASLQSDIKSY
VDFIKAPPSERDSLEQPRCPKPLGDLVESSVGAVLVDTGFDMNYVWKIMLSFLDPIMSSS
GFQLSPIRDIIEVCQTCGWKLQFNPSKMEKYYSVEAEVKGDDFHATASAVNRRKKDAEKI
AANSILTKLKAQGFIPEVNSLEKILKSSEKMKPKLIGYDETPSVTMDRIDDGLEFSGADL
DPRVHREVGDSRPFRITRMSETLASSSGAAGEQLKPSIPLEGHDSSTDLQSLSSSSSSSS
SSSGRSGKTTARSRLYEVCAINHWNHPSFDCMNEEGPSHLKMFTYKVVLEIEEAPNTIFE
FFGAPHLTKKAAAEHAAEAALWYLKKERYLGDTD

NT seq 4965 nt +upstreamnt +downstreamnt
atgcctgatggagagaccaattctacgactgccgatagcgtcaattttcagcccactagc
tctgcgtcggtcgagagatttatgggtctgtctccggtggatgatcagggagcgggttca
agtataagaacatcaggcaaagatccaaggagaatcgcaaggaaatatcaattggagcta
tgcgagaaagctttggaagagaatatcattgtttatcttgggacaggctgtgggaagact
cacattgctatacttctgatatacgagatgggccacttaatcaggaggccccagaagggt
atctgtgtttttctggctcctaccgttgctttagttcagcagcaagcaaaagttatagaa
gattctatagatttcaaggtcaaggtctactgtggaggttccaaatgcttgaatagccat
tatgattgggaaagggagatggaagaatatgaggtttttgtcatgacccctgaaatatta
ctgcgtaatttacaccactgctatatcaagatggagtttgttgaacttctaatatttgat
gaatgccatcatgcccaagtcaaaagtgaccattcttatgcagaaatcatgagagtgttt
tataaagcaaatgagcataaacgtccccggatatttggcatgactgcatctccagttgta
ggaaaaggtgcttgcaatcagcaaaatttatccaagagcatcaatagtcttgagaagtta
cttgatgcaaaggtttattcagttgaagatagggaagaactggaagcgtttgtgtcatca
ccgcgttttaaaatctattattatggtcctgttgcaactgggtcgtctagctcatttatg
acttactgttgcccacttgaggacgtgaaatgccagtgtatagtggctcttggtcagatg
aaaggtgaacacgaaggtctgctggccaccaagaaactgttgtgcaggatgcacaaaaat
atcatattttgtttggaaaaccttggtgtttggggggcattgcaggccagtaaaattctc
ttaagtgaagataactctgagcgaagtgaattgatagaggcagcagaggcaaacccaaaa
catgactccataagtgatagatatcttaatcaagctgctgaaattttcgcatccggttgc
aagatagatgctggggtgtcggatatgttaaatgttgatattttgaaagagccatgtttc
tcaaagaagcttttacggcttattggaattctttcttccttcaggcatcgacccaacatg
aagtgtataatttttgtgaatagaatagttatagctaggtccttgtcgtacatacttcag
aaccttaaatttctggcatattggaagtgtgattttctcgtcggagtccactcaaagttg
aggagcatgtcaaggaagaccatgaaccatattcttacaaaattccgatctggggagcta
aaccttttgattgcaacaaaggttggtgaagaagggcttgatattcagacctgctgtctt
gtgatacgatttgatcttcctgaaacagtgtctagctttatacaatcaagaggtcgagcg
cgaatgcctcagtctgaatatgccttccttgttgatagtggaaatgaaaaggagctaggg
ttgatagatgagtttcataaagatgaaaaacggatgaacagagaaatttcttctcgctca
tccattgagacatttgatggtcatgaagaaagcatctatagagtggtttcaactggtgca
tctgtcacttctggaagaagtatatctttactacatgaatattgctcaaaacttccacac
gacacgtacttcgaccccaagccgaagtttttctattgtgatgatttaggaggaactata
tgtcatgcaattctgccctccaatgcacctattccccaaattgtcagcagaccacagcct
gctggggttgctgctaaaaaggatgcctgtctaaaagctgtagaggaattgcataaactt
ggtgctctcagtgactatctcttgcccatgagagacaatgccaatgaaggggaattagaa
cttgactctgattctgacagctccgaagatgagacttcgcgacgggagcttcatgagatg
atatctcctgctgctttcaaagagtcttggactggctttggatatgttattctttactgt
taccatattaaatttactccaaatcctgaagataggatctacaaagaatttgggttattt
gtgaaggcaccacttccccaggaggctgtgagaatggaccttgagcttcatcttgcacat
ggaagatctgtaaaggtaaatttgatgccatcaagggtcgtcgagcttttggagaatgag
attacccaggccgagtgttttcaggagatgtttcttaaggtcattttagacagatcagaa
tttgttcacgactacattccattgagaaataatgtctctagatctatttcatcgacatct
tacttgttgcttcctgtgattgtccacgataatgagggatcggttttcatagattggaaa
gttattagaagatgtttatcctcccagattttccagaatcatgcatgctctatcgtcaaa
gaaactgcttcctcggatacccatttgatgctttatgatggccgtagaaggtcgagcgat
atcgagaatagtttagtgtacgtcccctacaagcgtgaattcttttttgttactaacatt
gtgaggaggaagaatggatacagccaatacaaggactcagggtccttgagtcattttgag
catttaaagaccaggtttggcattcatcttaaataccctgagcagcctcttctttgtgca
aaacccctattcagtttgcacaacttgctacataatagaaagcagaaagattctgaagca
ccttatctggaagaatattttatcgatatcgctcccgagctttgtcaattgaagataact
ggattttcgaaagacattgggagctctatatctttgttgccatcaattatgcatcgtcta
gaaaatttgcttgttgctattgaattgaagtgtatgctagcggctgcttttccagcggga
gctgaggttactgctaacagaattctagaagctctcaccactgagaagtgccaggaacga
atttccctggaaaggcttgaaatacttggtgactctttccttaaatttgccgtagcaagg
tacctttttctcgcccacgataagttcgatgaaggagaacttacacgacgacgttcttat
ttggtgaaaaatatcaatttattcaagctagcaactagaaagaatttacaggtatacata
cgtgaccagccatttgaacctagccaattttatttacttggtcgtccttgcccaagaatt
tgtaacgaggaaacacgaaacgatatccattctcacgataatgcaacaaataatgcaaaa
gctagtgagaccaagtgcagcaaaggccatcactggttacaaaagaaaacgatcagcgat
gtggtcgaagctctggtaggagcattcctagtcgacagtggcttcaaagctgcaattgca
tttctcaaatggatcggcataaaagtagaattcgaagcttcgcaggttaccaatgctctc
gtggcaagcaaggcttacgtcctacttgcagatactataaacatttcttcccttcaaagc
tcattaggccataaatttctccataaaggtctgctgctgcaggcgctcgtacatccgact
taccacaagcacggaggaggttgttaccagagattagagtttcttggggatgccgtcctg
gattacttgatcatgtcgtatctatattcagcatatcctaagctgaagccgggtctattg
acggatttgagatcagtgtttgtgaggaacgaagcttttgccaacgttgcggtcgatcga
ttcttctacaagtttctgctttgtgattctgctagccttcaaagtgatataaaaagttat
gtagacttcatcaaagcacctccttcggaaagagattcactcgagcagccgagatgtcca
aagcctttgggagacttggtggagtctagtgttggggctgttcttgttgatacagggttt
gatatgaactatgtctggaagataatgttatcatttctggatcctatcatgagctcttca
ggcttccagcttagtcctattcgcgacataatcgaagtttgtcaaacttgtggctggaaa
cttcagtttaatccatcgaaaatggaaaaatattattcggttgaagcagaggtgaaaggg
gacgactttcatgccacggcttctgctgtcaaccgtcgaaagaaagacgccgagaaaatc
gctgccaactctatactcacgaagttgaaggctcaaggattcatacctgaggtcaattca
ttagagaagattttaaagtcgagcgagaagatgaaacctaaattgattggttatgatgaa
acaccctcggtcacgatggatcgaatcgacgatggcttagaattttctggtgcagactta
gatcctcgtgtgcaccgtgaagttggggattctcgtccatttcgtattacacggatgagt
gaaacgctggcttcttcatctggagctgcaggagaacagctgaagcctagcatccccctt
gaaggtcatgatagttcaacagacttgcagtcgttgtcatcgtcgtcatcgtcatcatcg
tcatcgtcaggtcggtcggggaaaacaacggcaagatctcgtctgtatgaagtttgtgcc
ataaaccattggaatcacccttcatttgactgcatgaatgaggaaggaccaagccattta
aagatgttcacatacaaggttgtgttggagatagaagaagcccccaatacgatattcgag
ttcttcggagcaccacatttgacgaagaaggcggcagcggagcatgcagcagaagcagct
ctttggtacttgaagaaggaaaggtacttgggtgacacagattga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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