KEGG   Chrysemys picta (western painted turtle): 101946254
Entry
101946254         CDS       T04662                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic04510  Focal adhesion
cpic04512  ECM-receptor interaction
cpic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101946254 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101946254 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101946254 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpic04147]
    101946254 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:cpic00536]
    101946254 (COL6A1)
Exosome [BR:cpic04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   101946254 (COL6A1)
Glycosaminoglycan binding proteins [BR:cpic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101946254 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   101946254 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF1194 vWA-TerF-like Tfb4
Other DBs
NCBI-GeneID: 101946254
NCBI-ProteinID: XP_005282690
Position
Unknown
AA seq 1021 aa
MKLANFLVTFLLQVCFLWSGALAQQPEIVNNIKTFQDCPVDLFFVLDTSESVALREKPFG
DVVSQVKDFTKRFIDKLTERYYRCDRNLVWNAGALHYSDDVVLIKGLERMPAGRADLKDR
VSAVNYIGKGTHTDCAIKRGIEELLITGSHQKENKYLIVVTDGHPLEGYKEPCGGLEDAA
NEPKHLGIKVFSVAISPGQLEPRMSIIATDPSYRRNFTATGKTVDIDYTIETIIDMIKKN
MEPMCCSYECKQDRGPVGPPGDPGYEGERGKPGLPGEKGVAGEPGKPGDLGPIGYQGMKG
EKGIKGEKGSRGSKGAKGEKGRHGIDGIDGMKGESGFSGLPGCKGSPGFDGFQGPPGPNG
DSGDYGPKGAKGEPGELGNPGRPGKDGNSGDKGQAGSPGGPGQKGELGDEGAPGPVGPSG
ERGDKGERGPLGTPGTRGPKGDKGDLGPQGDQGREGLLGEPGAPGEGGPIGPKGYRGEEG
PMGPEGPKGSPGPIGLPGEPGLMGERGADGIPGNGTNGPPGCPGNPGNRADPGPKGSKGY
PGPKGDVGEVGDPGEDNRNPGPSGPKGSKGYRGPEGSQGPPGPPGPPGPDECEILDIIMK
MCSCCECKCGPIDVLFVLDSSESIGLQNFKIAKDFIIEVINRLSKDERVKFERGDSRVGV
VQYSHGNTQELVAMGDVNITNIRDLKEAVKKLNWIAGGTYTGEALQFTKEKLLARFASDK
RVAIVITDGRSDTLRDLTPLSSLCEINTQVVSLGIGDIFRAPPNSEQLGVIACEGTSYRP
GLSVQRDNYAELLEDTFLQNVTSYICREKKCPDYSCRINFTGPADITLLVDSSTSVGSQN
FELTKKFVKRQVERFLTAHMPSEDSVRVSVVQYSGKNQQILEARFLQNYTVIAKAIDDME
FLNDATDVNAALRYVTNLYRQSSRTGANKRVLILSDGNSQGITRNDIEKAVQAAQREGIT
IYVLAIGSQVHESNLQALVTGKTKEQNVAYEANHLFRMPDYKSLLQGVFDLKVSRKVATE
N
NT seq 3066 nt   +upstreamnt  +downstreamnt
atgaagttagcaaactttttggtcactttcttgcttcaagtctgtttcctatggagcggg
gcgctggctcaacagccagaaatagtcaacaatattaaaacctttcaagattgccccgtt
gatctgttttttgttctggatacatcagaaagtgttgctttaagggaaaagccatttgga
gacgtcgtttcacaggtgaaagattttaccaagcggttcattgacaagctaacagaaagg
tattaccggtgtgaccggaacttggtgtggaatgccggagctctgcattacagcgatgac
gtcgtgctgatcaaagggctcgaacgaatgcccgctggacgagctgacttaaaggacaga
gtgtctgctgtgaactacatcgggaaaggcacccatacagactgcgccatcaagagaggg
attgaggagctgctcatcaccggctcccatcagaaggagaacaaatacctgattgtggtg
acagacggacaccccttggaagggtacaaagagccatgtggaggactggaagatgctgcc
aatgaaccaaagcatctggggatcaaagtgttctccgttgccatttctcctggccagctg
gaaccaaggatgagtattattgccacggaccccagctatcgtcgcaacttcacagcaacc
ggcaagacagtagatattgactatacaatagaaaccatcatagatatgattaaaaagaat
atggaaccaatgtgctgctcctatgagtgcaagcaagatagagggcctgtgggaccacct
ggggatccaggatatgagggggaaagaggaaagcccggtcttcccggtgagaagggagtt
gctggagagccaggcaagccaggtgacctgggacccattggctaccaggggatgaaggga
gaaaaaggcattaaaggagaaaagggctcgcgaggatccaaaggagctaagggggagaag
ggcaggcatggcattgacggcatagatggcatgaagggggagagtggattttctggattg
ccaggctgcaagggatcaccaggatttgatggatttcaaggccctcctggacctaacgga
gattctggtgattacggacccaaaggagcgaagggagaacctggggagcttgggaaccct
ggcagacctgggaaagatggaaactctggagacaagggacaagctggcagtcctggtggc
cctggacagaaaggggagttgggggatgagggagctccaggcccagttggcccatctgga
gaaaggggagacaaaggagaacgagggccactgggcacccccggcactcgtgggcccaaa
ggagacaagggtgatcttggcccacaaggtgaccaaggacgggaaggactgctcggagag
cccggagccccgggtgagggtggtccgattggacccaaggggtacagaggagaagaagga
cccatgggacctgagggccccaaaggatcccctggacccatcggattgcctggagagcct
ggcttgatgggtgaaaggggagcggatggcattccaggaaatggcacaaatggtcctccg
ggctgcccaggcaatccaggcaacagagcagatcctggtcctaaaggctcgaaaggctat
cctggtcccaagggcgatgttggagaagtaggagaccctggggaagataatcgcaaccca
ggtccctcaggtcctaaagggtccaagggttaccgaggccctgaaggctcccagggacct
cccggacccccagggcctccaggaccagatgaatgtgaaattttagacatcataatgaaa
atgtgctcttgctgtgaatgtaaatgcggccccatcgatgtgctcttcgtgttggacagc
tcggagagcatcggcctgcagaacttcaagattgccaaggatttcatcattgaagtcatt
aacaggctgagcaaagatgagcgtgtgaagtttgaacgtggggattcccgagtgggtgtc
gtacagtacagccatggcaacacccaggagctggtggctatgggcgatgtcaacattacc
aacatcagagacttgaaggaggccgtgaagaagctgaactggatagcgggtggcacctac
actggggaagcccttcagttcaccaaggagaaactgctggcgcggtttgcctccgacaag
agggtggccatcgtcatcacagacggacggtctgacacgctgcgggacctcaccccgctc
tcctcgctctgtgaaatcaacacccaggttgtttccctgggcataggtgacatcttccga
gcaccccctaactcggagcaactcggtgtcattgcttgtgaaggcacatcctaccgcccg
ggactgtctgttcaaagggacaactacgctgagctgctggaagacacgttcctccagaac
gtgacctcatatatctgccgagagaagaaatgtccagactacagctgcagaatcaacttc
acagggccagctgacatcactctcttggtggacagctccaccagcgttgggagccagaac
tttgagctcaccaagaagtttgtgaagcggcaggtggagcggttcctgacagcgcacatg
ccttcggaggactctgtgcgcgtctccgttgtccagtacagcggcaagaaccagcagata
ctagaggcacggtttttgcagaactacacagtgatcgccaaagcgattgatgacatggag
ttccttaatgatgccacagatgtcaatgccgccctccggtacgtcaccaacctgtaccgg
cagtcttcccggaccggcgccaacaaaagggtactgatcttatcagatggcaactctcaa
gggatcacgagaaatgacatagagaaggcagtgcaggcggctcagagggagggcattacg
atatatgtgctggcgataggcagccaagtccacgagtccaacctccaggcccttgttact
gggaagaccaaagagcaaaatgtggcctatgaggcgaaccatctcttccgaatgcctgac
tacaagtccctgctgcaaggcgtcttcgacctaaaagtctccaggaaggtcgctactgag
aattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (50)   

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