KEGG   Lachnoclostridium phytofermentans: Cphy_2763
Entry
Cphy_2763         CDS       T00619                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
cpy  Lachnoclostridium phytofermentans
Pathway
cpy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Cphy_2763
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpy03019]
    Cphy_2763
   03016 Transfer RNA biogenesis [BR:cpy03016]
    Cphy_2763
Enzymes [BR:cpy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Cphy_2763
Messenger RNA biogenesis [BR:cpy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Cphy_2763
Transfer RNA biogenesis [BR:cpy03016]
 Prokaryotic type
  tRNA degradation factors
   Cphy_2763
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KhpA-B_KH KH_5
Other DBs
NCBI-ProteinID: ABX43123
UniProt: A9KNK6
Position
complement(3362998..3365094)
AA seq 698 aa
MYKSFSMELAGRTLSVDVGRVAAQANGAAFMHYGDTVVLSTATASDKPREGIDFFPLSVE
YEEKLYAVGKVPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDP
DCSPELTAMLGSAISVAISDIPFDGPCATTQVGLVDGELVFNPTAAQKAVSDLALTVAST
RDKVIMIEAGANEVPEDKMLEAIFAAHEVNQEVIQFIDKIVAEFGKEKHGYISCEIPEEM
FAAIKEVVTPEQMEEAVFTDVKQVREENIREIKNKLAEVFEESNPEWLHLIDEAVYKYQK
KTVRKMILKDHKRPDGREIHQIRRLAAEVDMLPRVHGSGMFTRGQTQILTVTTLAPLSEA
QKLDGLDEAEKSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEAEF
PYAIRTVSETMESNGSTSQASVCASTLSLMAAGVPIKKQVAGISCGLVTGDTDDDYLVLT
DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRAIIEEAIRRTKEAREYIINEVMT
PAIAEPRTEVGKYAPKIIQIQIDPQKIGDVVGQRGKTINAIIEQTGVKIDINDEGAVSVC
GTDKDMMDKAINMIRTIVTEFEEGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKISKER
INHVEDVLTLGDVVKVVCLGKDKMGRISFSIKDYKEEN
NT seq 2097 nt   +upstreamnt  +downstreamnt
atgtacaaaagtttttccatggaacttgccggcagaacattaagtgttgatgttggtaga
gttgcagcgcaagcaaatggtgctgcatttatgcattatggcgatactgtagtattatct
acagctacagcatctgataagccaagagaaggaattgatttcttcccattaagtgtagaa
tatgaagaaaagttatatgcagttggtaaggtaccaggtggatttaataagagagaaggt
aaagcaagtgaaaatgctattttaacttctcgtgttattgaccgtccaatgagacctttg
ttcccaaaagattatcgtaatgacgttacattaaataatctagtaatgtctgttgatcca
gattgtagcccagagttaactgcaatgcttggctctgctatttctgtagcaatttctgat
atcccatttgatggaccatgtgcaacaactcaagttggtcttgttgatggagagcttgta
tttaatccaacagctgctcagaaagcagtatctgatcttgcattaacagtagcttcaaca
agagataaagttatcatgattgaagcaggtgcaaatgaagtaccagaagataagatgtta
gaagctatctttgctgctcatgaggtaaatcaagaagtaattcagtttatcgataaaatc
gtagctgaatttggtaaagaaaaacacggctatattagttgcgaaattccagaagagatg
tttgcagcaatcaaagaggttgttactccagaacagatggaagaagcagtatttactgat
gtgaaacaggttagagaagaaaatatccgtgaaattaagaataaattagctgaagttttt
gaagaaagcaatccagagtggcttcatttaattgatgaagcagtttataaatatcagaag
aagacagttcgtaagatgattttaaaagatcacaagcgtccagatggtagagaaatccac
cagattcgtcgtcttgctgcagaagtagatatgcttccaagagtacatggtagcggtatg
tttacccgtggtcaaactcagatattaacagtaactacgttagcacctttatcagaggca
cagaagttagatggtcttgatgaagctgagaaaagtaagagatatatgcatcactacaac
ttcccatcctattctgttggtgagacaaagccaagtagaggaccaggacgtcgtgaaatc
ggtcatggtgcattagcagaaagagcattaatacctgttcttccaagtgaggcagagttc
ccatatgcaattcgtacggtatctgagactatggaatctaacggttctacttctcaggcg
agtgtttgtgcttctaccttatccttaatggcagctggtgttccaattaagaaacaggtt
gctggtatttcttgtggtttggtgactggtgatacagatgatgattatttagtattaaca
gatattcagggtcttgaagatttcttcggcgatatggactttaaggttgctggtactcat
gatggtatcactgcaattcagatggatattaagattcatggtttaacaagagcaattatc
gaagaagcaattagaagaacaaaggaagcaagagagtatattatcaatgaagttatgact
ccagctattgctgagccaagaacagaagttggtaagtatgcgcctaagattattcagatt
caaatcgatcctcagaagattggtgacgttgttggtcagagaggtaagacaatcaatgca
atcatcgagcagactggtgtaaagattgacattaatgatgaaggtgcagtatccgtttgt
ggaacagacaaggatatgatggataaagcaatcaatatgattcgtactatcgtaactgag
tttgaagaaggtcaggtatttgaaggtaaagtcatcagtatcaaagaattcggtgcattc
cttgaatttgctcctggcaaagaaggtatggttcatatctctaagattagcaaagaaaga
atcaatcacgttgaagatgtgttaaccttaggagatgttgttaaagtagtatgccttggt
aaggataagatgggccgtattagctttagtattaaggattataaagaagagaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (77)   

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